[No authors listed]
RNA-binding proteins (RBPs) determine RNA fate from synthesis to decay. Employing two complementary protocols for covalent UV crosslinking of RBPs to RNA, we describe a systematic, unbiased, and comprehensive approach, termed "interactome capture," to define the mRNA interactome of proliferating human HeLa cells. We identify 860 proteins that qualify as RBPs by biochemical and statistical criteria, adding more than 300 RBPs to those previously known and shedding light on RBPs in disease, RNA-binding enzymes of intermediary metabolism, RNA-binding kinases, and RNA-binding architectures. Unexpectedly, we find that many proteins of the HeLa mRNA interactome are highly intrinsically disordered and enriched in short repetitive amino acid motifs. Interactome capture is broadly applicable to study mRNA interactome composition and dynamics in varied biological settings.
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GNPDA1, SCARNA27, GABPB1-AS1, NFYC-AS1, FKSG29, PHKA2-AS1, HDAC6, PDCD6, C17orf96, LOC100287042, MIR3652, ARPC4-TTLL3, ATP5J2-PTCD1, TGIF2-C20orf24, FARSB, ABCC5, ABCF2, HUWE1, ARPC4, ARPC1B, ACTR3, ACTR1A, LRPPRC, TRAP1, BCAP31, NAMPT, RBM12, TOB1, G3BP1, SUGP2, MBNL2, ABI2, CEBPZ, ATP6AP2, SLC25A15, RCL1, RBM7, RBM6, RBM5, ALYREF, PSME3, MPHOSPH10, NUTF2, USPL1, DDX39A, STX6, HNRNPR, MRPS31, RIDA, SF3B4, AKAP8, STUB1, SIGMAR1, SMNDC1, BCAS2, SF3A1, CDKN2A, APBB3, SMYD5, ADAR, EMC8, NPM3, HMG20A, NOD1, RACK1, NDC80, NSA2, YAP1, CD2BP2, TUBGCP3, RBM14, EMG1, ACAA2, PPIE, TAB1, MAD2L2, PIBF1, SLC25A17, NXF1, CREB3, LRRC41, SYNCRIP, ENOX2, MYBBP1A, DDX17, ADARB2, CHERP, HYOU1, IPO8, NOP56, RNASEH2A, GLRX3, DCTN2, LAMTOR5, PRDX4, AGPAT1, RPP30, SLU7, MRPL28, CCT7, CCT4, CCT2, PRPF8, TBL3, HEXIM1, TRIM16, NPRL2, IGF2BP1, IGF2BP3, IGF2BP2, MTX2, SPINT2, KHDRBS1, CELF1, FARS2, EBP, NUDC, KIF1C, NES, AHCYL1, SRSF10, ZNF460, UTP14A, CD3EAP, RUVBL2, MRPS30, WDR3, PNPLA6, TCERG1, EHMT2, RNPS1, SUB1, SRSF8, POP1, SF3A3, HNRNPA0, SEC61B, TOMM34, PDIA5, LMAN2, STIP1, EBNA1BP2, CKAP4, ASCC3, RAB32, CCNI, METAP2, IMMT, SF3B2, SLC27A4, KIF2C, RBPMS, RCC1, NUDT21, CPSF6, DDX52, WWP2, CHD2, DUSP14, CHD3, DNAJB4, HNRNPUL1, KRR1, CDC37, CORO1A, C14orf1, NUDT3, PSIP1, STRAP, WDR6, CEP250, SEC23IP, SUPT16H, MRPL3, RPL35, SEC63, CA5B, GTF3C6, PACSIN2, CHP1, ATXN2L, USP18, TREX1, VPS26B, MED8, PARK7, COPE, LARP4, DDX42, U2AF2, EXOSC8, RNF13, TWF2, SYNPO, SLC35A4, SLC25A25, FLYWCH2, ZNF618, NT5C3B, CCDC124, CKB, CIRBP, LRRC42, KLHDC3, DCD, FTSJ3, AP1S1, ADD1, CLCN6, AGAP11, SFXN4, CLK3, CLNS1A, CLTC, HIST4H4, A1BG, ZC3H18, CDYL2, ANKS3, MSI2, CANT1, WDR81, TBC1D16, FAM210A, TTC39C, ZNF787, GIPC3, ZNF792, ATXN7L2, C1orf131, LIX1L, COL4A3, COL7A1, RBM45, CLHC1, CCDC58, COPA, COPB1, SLC31A1, ADK, CPEB2, COX5B, EGFLAM, DNAJC21, WDR36, CPT1A, GPAT4, RALYL, PTRH1, TAF1L, ATF6B, SPIN4, CRKL, ASB8, S100A16, CRY2, PARP1, CS, LDLRAD3, XRRA1, DNHD1, CPNE8, CEP128, GCOM1, CSNK2B, ZSCAN29, CSRP1, SLC25A10, KIF18B, CSTB, CSTF1, CSTF2, ZNF558, CREB3L4, C1orf52, B3GALNT2, RC3H1, CTNNA1, RNF187, CTNNB1, CTNND1, YDJC, TTL, FAM117B, CCNYL1, CTSL, XXYLT1, SRFBP1, MARVELD2, CYC1, VKORC1L1, AMOTL1, LOC155060, RBM33, GRK2, ESCO2, TTLL11, ADSL, DGKQ, AP2A2, NOP9, DARS, ADAL, AARS, FAM134C, DBN1, ZNF383, DCN, DCTN1, DDOST, DDX1, DDX3X, DDX5, DDX6, XIRP1, DHX8, DHX9, DDX10, AES, DHX15, DCLK2, DECR1, DES, DFFA, SSBP4, DHX36, CYB5R3, NQO1, DIAPH1, DKC1, DNA2, DYNC1H1, AGL, DPH1, DSP, DTYMK, DUT, DYRK1A, E2F1, E2F2, E2F4, ECHS1, EEF1A1, AGO3, EEF1B2, EEF2, EFNA4, MEGF8, RILPL2, EIF1AX, ZFC3H1, EIF2S1, UBR1, ACSF3, EIF4A1, EIF4A2, EIF4B, EIF4G1, EIF4G2, ELAVL2, ELAVL1, CADM4, TXLNA, EMD, MARK2, ABCA2, ENO1, TMEM184A, R3HCC1, AK1, DMTN, NLRP11, EPHX1, STX2, EPRS, NR2F6, ERBB2, ERCC3, FBL, ETF1, ETFDH, ALAS1, ETV5, EVC, EWSR1, F2RL1, FASN, PATL1, EFEMP1, SLC16A9, HNRNPA3, HNRNPUL2, ZUFSP, TMED4, FDPS, LNX2, FEN1, FER, CASC3, XRN2, PUF60, SCAF8, DLGAP4, CPEB3, ADNP2, FNDC3A, R3HDM2, FASTKD2, SEC31A, FKBP3, FKBP4, WDR37, KIAA0907, CEP164, DHX30, RALY, NCBP2, SEPHS2, RPIA, SCAP, SNW1, PDCD11, ACIN1, RIMS1, WDFY3, KLHDC10, SPEN, FBXO21, CNOT1, SNRNP200, ALDOC, UNC13A, RBM34, SAMD4A, XPO7, FNBP1, ENDOD1, CLUAP1, RRP1B, KDM4C, PPRC1, PEG10, MRPS27, TNRC6B, CLASP2, POGZ, ZC3H3, WDR43, FLNA, GGA3, NUP205, RTF1, DIP2A, LARP4B, KANK1, ATG4B, GANAB, FAM120A, FAM168A, JMJD6, ZC3H4, RRS1, PRRC2C, RRP12, ABCF1, PLCL2, DNAJC9, BOP1, MTCL1, SCFD1, ZC3H7B, EXOC7, FAM208A, CSTF2T, WWC1, NCAPD3, ZCCHC11, RPGRIP1L, FMR1, USP22, NEDD4L, SZT2, SYNE1, UBR4, FNBP4, LARP1, PPP1R13B, PUM2, RRP8, SMG5, PIP5K1C, CTDNEP1, EXOSC2, COMMD3, TMED3, GPR161, TARDBP, HARS2, SF3B1, PES1, POFUT1, SCRIB, SKIV2L2, R3HDM1, RPL13A, SRRM2, ZNF281, PRAME, TNPO3, ADAT1, RBFOX2, PIGN, GTPBP4, ARL2BP, DDAH1, CDC42EP4, HEBP2, MKRN1, BACE1, FAM89B, SNHG1, EDC4, ARFIP2, TRIM29, STX12, GSPT2, GABARAPL1, PITPNB, OSBP2, KIF4A, TFIP11, PRPF6, MTOR, FRG1, FTH1P3, FUS, GPATCH11, WDR27, MSRB3, XRCC6, CFAP65, RNF144B, PCSK9, ZNF324, LSM4, TNFAIP8, TXN2, ANAPC13, RPL36, LETMD1, DCAF13, POLR1A, GALNT1, AHCTF1, C1orf43, NOL11, GEMIN5, FAM98A, TPGS2, SIN3A, C20orf194, KBTBD2, SYF2, RWDD3, PNISR, NGDN, HINFP, ULK3, TKFC, SPATS2L, FAM32A, PTCD1, OSBPL3, ANKRD17, LSM14A, POLDIP2, HERC4, CCDC9, CHTOP, SZRD1, PRPF31, TCTN3, GAPVD1, SERBP1, TES, NOC2L, RSL1D1, SENP3, GMEB2, TSPAN17, FBXO5, ERAL1, GBAS, GNL3, GCHFR, PTPN18, INTS6, AGO1, DAZAP1, AATF, TBL2, ELP4, SNORA66, SNORD54, SNORD41, SNORD24, SNORA74A, COPG2, PABPC1, AKAP8L, TRUB2, DNAJC2, MLH3, TRMT2A, DIEXF, PELP1, SND1, STAU2, RPUSD2, ST6GALNAC4, ZBTB11, AGO2, SLC39A1, TNFRSF21, SESN1, LSM1, LSM3, R3HCC1L, DIMT1, CRCP, ZNF544, RBMX, ZNF638, HTATSF1, PRPF19, UTP20, RRP7A, APOBEC3C, DESI1, SGSM3, BIN1, GLUD2, GNAI3, GOLGB1, GOT1, P4HA3, ZNF740, ANKRD52, SPRYD4, FAM98B, NOMO2, PDXDC2P, TSEN54, PTRF, ZNF780A, EMC10, ZNF326, RPUSD3, RPL7L1, TMED10P1, DPY19L4, FIRRE, LIN9, GRK5, GRK6, GRB2, RAPGEF1, MRPS28, COA3, DCPS, GRN, MRPS18B, MRPL42, MRPL13, ATAD2, ZC3H7A, MRPL18, MED4, CCDC59, BABAM1, MRPL15, MRPL22, COMMD9, DROSHA, SCG3, SAP30BP, SLC25A4, SLC25A5, ABR, PDIA3, GRSF1, GSPT1, GSTM3, GTF2A1, GTF2E2, GTF2F1, TMOD2, ABT1, UQCR10, REPIN1, GUK1, SNX8, STRN4, GNL2, RBM15B, CPSF1, TRA2A, EPN1, SEC61A1, TIMM22, OSGIN1, DMGDH, DONSON, GLTSCR2, TNPO2, SH3KBP1, H1F0, HIST1H1C, HIST1H1B, HIST1H2AE, ANXA1, ANXA2, HADHB, HADH, HARS, HDAC2, HDGF, HDLBP, DNTTIP2, PIK3R4, ANXA7, HLA-A, ACACA, HLX, AOC2, HMGB1, HMGB2, HMGB3, APAF1, HIST2H2AB, DDX51, HNRNPA1, HNRNPA2B1, HNRNPAB, HNRNPC, HNRNPD, HNRNPF, HNRNPH1, HNRNPH2, HNRNPH3, HNRNPK, HNRNPL, HNRNPU, HOXC10, HRAS, APEH, PRMT1, HSPA1A, HSPA1B, HSPA4, HSPA5, HSPA8, HSPA9, HSPB1, HSP90AA1, HSP90AB1, HSPD1, HSPE1, JMJD8, METTL2A, ASB16-AS1, CCDC137, MSL1, ZBTB8OS, IDH1, IDH3B, IFI16, IFIT2, ZNF860, IFNGR1, RILPL1, IL18, ILF2, ILF3, ILK, INPPL1, IRAK1, ITGA6, ITPA, ITPK1, ITPR2, ARCN1, FAM111B, AGRN, KIF22, KPNA2, KPNA5, TNPO1, KRT18, C15orf52, C16orf87, ZNF761, NOTCH2NL, COA6, KTN1, RBM12B, PTRHD1, HSP90AB2P, ACAT2, LGALS1, LGALS3, LIG1, LIG3, MEX3D, MYO18A, LMNA, KNOP1, ZNF772, SRRD, ARL2, LINC01000, LRP1, ANKHD1-EIF4EBP3, LTA4H, M6PR, CAPRIN1, LOC407835, MAN2B1, MAP4, MAZ, MBD1, MBNL1, MCL1, MCM4, MCM7, MDH2, MECP2, MEF2D, MEIS1, RAB8A, MEOX1, MFAP1, MKI67, ALDH6A1, MOV10, MPV17, MXRA7, WHAMMP2, PLEKHM1P1, MINOS1, NR2F1-AS1, RNF216P1, ASS1, MTIF2, MTR, MVK, MYO1E, MYO6, MYO9A, NAB1, HNRNPM, NAP1L4, ATF4, NCL, NDUFB8, NDUFB9, NDUFS2, NDUFS3, NDUFS6, NDUFV3, RPL10A, NF1, NF2, NFATC3, ATP1A3, NFKB2, NFX1, NFYA, SNU13, ACO1, NME1, NME4, NQO2, NMT1, NOP2, NONO, PNP, NPAS2, NPM1, NPR2, NRDC, YBX1, NTHL1, ROR2, NUMA1, NVL, CISD2, OAZ2, OCRL, OGDH, ATP5A1, OPHN1, OSBP, OXA1L, P2RY2, P4HB, PA2G4, PEBP1, PODXL2, PRDX1, ARHGEF4, ARHGEF3, PARN, HP1BP3, NSDHL, PBX2, ATP5C1, PCBP1, PCBP2, PCCB, SLC35B3, MED31, EXOSC3, MRPS18C, VPS36, UBXN1, TXNDC11, NMD3, MRPL2, NOSIP, MRPL4, FCF1, MRPS7, PLLP, ADIPOR1, UTP18, MECR, TFB1M, APH1A, UTP11, SBDS, IER3IP1, RNFT1, COPS4, DYNC1LI1, MRTO4, DBR1, HERC5, CHMP1A, IPO11, RAPGEFL1, DDX47, NUSAP1, PHF20, EMC4, PAIP2, MRPL37, TBC1D7, MRPL27, UBAP1, MEX3C, SPG21, ARL6IP4, NGRN, CDC40, UCHL5, CSAD, PDE2A, EIF3L, NIP7, WDR83OS, NOL7, PDE4B, DDX41, SCARA3, YTHDF2, LIMA1, C9orf114, NOP16, RTCB, PPHLN1, ZCCHC17, HDAC7, LARP7, ESF1, PCF11, SRRT, NOP58, TRMT6, GET4, DPH5, SLC25A39, RBMX2, C14orf166, SF3B6, MRPS23, ZFR, SARAF, LSM8, CPSF3, UIMC1, CMPK1, WBP11, MSRB1, RAPGEF6, LUC7L3, ERAP1, INPP5K, KDM3B, ATP5G3, PEPD, PFAS, PFKFB4, PFKM, ATP5J, PGD, SLC25A3, ATP6V1B2, PIK3R2, PIN4, PKM, PKNOX1, PLA2G4A, PLCB3, ATP6V0B, PLCG1, PLEC, ADAM22, ATP6AP1, FGFRL1, EXOSC9, EXOSC10, PCBP3, SETD4, POLE3, PNN, MRPL39, NANS, PODXL, POLA1, POLE2, POLH, POLR2A, POLR2B, GDAP1, POLR2K, POLRMT, YIPF1, GAR1, RBM27, MRPS21, XRN1, RNF216, RBM47, RHOF, PUS7, RC3H2, GNL3L, DDX49, POU5F1, DDX56, GPN2, TMED9, MPHOSPH8, KLHDC4, ZRANB1, PPIA, PPIB, SAMD9, NDE1, ANKRD49, WDR55, GPATCH4, QRICH1, PALMD, FNBP1L, ANKHD1, NSUN2, ALKBH5, PQLC2, MKS1, RPP25, YTHDF1, DNAAF5, CHTF8, ZSCAN32, HAUS4, TRMT10C, OCIAD1, TRNAU1AP, FAM120C, C1orf109, SSH3, TMEM132A, GID8, PIH1D1, NOL8, PTCD3, ATG16L1, PDPR, C9orf40, ATP5SL, AGGF1, ARHGAP17, PRPF38B, CEP192, HEATR1, RBM28, SRBD1, HAUS2, MTPAP, RFWD3, TBCCD1, MRPS10, MRM3, RPRD1A, GOLPH3L, SETD5, FANCI, RAVER2, NAT10, PPP2R4, CCDC25, ELP2, PSPC1, IMP3, RHOT1, FBXW7, BRIX1, DDX19A, ABCF3, SLC39A9, LSG1, STRBP, COPRS, HJURP, PPP5C, LRRC59, NCBP3, HIST2H4B, RBM38, GALNT10, FOXRED1, PRIM1, PRIM2, MED29, OTUD5, ZCCHC8, FAM46A, KIF21A, ANKRD10, TRMT1, THUMPD1, ZDHHC7, FLVCR2, LYAR, RAB20, NHP2, DDX27, PRKACA, NPLOC4, IWS1, RABL6, YEATS2, NSUN5, RBM22, POLR3B, TSR1, ASF1B, VPS35, NAXD, CNDP2, CCAR1, EXOC2, TDP1, PRKCA, TXLNG, DDX28, PCID2, MBNL3, TRERF1, VPS11, DCAF6, UBAP2, CENPJ, ZC3H15, PKN2, PBK, BIN3, PRKDC, LANCL2, RCC2, NKRF, FAM212B, C20orf24, KLHL7, MYDGF, ALG1, UBFD1, MAP2K5, KIAA1217, MEPCE, KYAT3, METTL3, PPAN, BCCIP, SAR1A, PSKH1, ZC3HAV1, CDC42SE1, DHX33, PSMB5, MRPS22, EMSY, SMYD2, PSMC1, CCDC47, PSMC2, COQ9, PSMC3, PDXP, RSRP1, PSMC4, TWSG1, UTP3, PCBP4, DDX24, PSMD1, PSMD2, PCNP, PSMD3, AVEN, PSMD4, REXO4, GOPC, BACH1, APMAP, RTN4, ADCK1, ZNFX1, ATP10D, ZNF248, SNX14, PTBP1, CLK4, S100A14, SNORA6, WDR18, PPM1H, ISY1, RNF150, ODF2L, XPO5, RPTOR, NUFIP2, KIAA1324, MKL1, USP36, KIAA1524, CHD8, DDX55, FANCM, PTPN1, SFMBT2, NCOA5, GATAD1, HES4, PTPN9, CCAR2, LSM2, PURA, PURB, PTBP2, WFDC1, PWP2, ABCD3, PXN, PEX5, ALDH18A1, ENOPH1, CREBZF, PRUNE, KMT2C, EPS15L1, RBM25, QARS, RAB5B, RAB5C, RAD51D, RAF1, RAN, RAP1GDS1, RAP2A, NTN4, RBM3, RBM4, RBMS1, RBMS2, SNORA33, CCND1, RCN1, RDX, UPF1, RFX5, AFAP1, GPBP1L1, SLC25A19, SNORA63, AASDHPPT, ELAC2, EEFSEC, C14orf93, SNORD21, ROCK1, RPGR, RPL3, RPL4, RPL5, RPL6, RPL7, RPL7A, RPL8, RPL10, RPL13, RPL15, RPL17, RPL18A, RPL19, RPL21, RPL22, RPL23A, RPL24, RPL27, RPL30, RPL28, RPL29, RPL31, RPL32, RPL34, RPL35A, RPLP0, RPN1, RPS2, RPS3, RPS3A, RPS4X, RPS5, RPS6, SNORA21, SNORA52, RPS6KB2, RPS7, RPS8, RPS9, RPS10, RPS11, RPS12, RPS15, RPS15A, RPS18, RPS20, RPS21, RPS24, RPS26, RPS27A, RPS28, RYK, S100A4, S100A11, SAFB, ATXN2, BID, RNF123, SDHA, UBE2O, SH2D4A, ZBED8, SEMA3F, RBM26, SAMSN1, TMBIM1, LIN7B, SEPW1, SFPQ, MLST8, FAM110C, SRSF1, SRSF2, PAPD5, SRSF3, RHBDF1, SRSF4, SRSF5, SRSF6, NOC3L, SRSF7, XPO4, KIAA0754, TRA2B, ZMAT3, ZNF106, CDH24, INF2, NARFL, ZDHHC6, FAM83G, SHC1, ANAPC1, SHMT2, MFSD1, TNS3, PARP12, FNDC3B, MTHFSD, RBM15, CEP85, DDX31, NORAD, DEPTOR, ELOVL1, YTHDC2, RANBP17, MRPS26, MRPS24, MRPS15, MRPS11, MRPS5, MRPL41, MRPL32, MRPL11, MRPL1, SKP2, NOL6, JMJD4, KRI1, UPF3B, RSRC2, ANKRD33B, SLC3A2, NADK, SLC4A2, SPATS2, SMTN, UBE2Z, C8orf33, SNORA5A, SNORA8, SNORA13, BMP8B, SLC20A1, SLC20A2, SNAI2, HLTF, FUNDC2, SMARCC1, MRPS34, LRRC61, SMARCC2, SMARCE1, SMPD1, SUMO3, FSCN1, SNRNP70, SNRPA1, SNRPC, SNRPD1, BNIP2, SNRPD2, SNRPG, SNX1, SNTB2, SON, SP1, SP100, SPN, BPHL, SRM, SRP14, SRP19, SRP54, SRP68, SRP72, SRPK2, SRPRA, SSB, SSBP1, SSR2, SSRP1, ZFP36L1, STAT3, SCARNA3, SCARNA5, SCARNA16, SNORA17A, SNORA30, SNORA17B, SNORA3B, SNORA54, SNORA74B, ZFP36L2, STK10, STXBP1, SUPT4H1, SUPT5H, SUPT6H, SUPV3L1, SURF1, SURF4, SURF6, BST2, TAF1, TAPBP, BTF3, TARBP2, TAZ, SNORD9, SNORD7, SNORD76, SNORD104, TCF12, TCF20, MLX, TCOF1, BUB1, TDG, TFAM, TFRC, BYSL, THRA, TIA1, TIAL1, TK1, TLN1, TMSB4X, TNFAIP1, TNFAIP3, TNS1, TOP1, TP53BP1, TP53BP2, TPD52, TPD52L2, TPM3, TPP2, TPR, TPT1, TRIP6, C4BPA, SNHG4, TSC1, TSG101, TTK, TUBA4A, TUFM, PIN4P1, HIRA, TXN, TYK2, U2AF1, UBC, UBA1, UBE2I, UBE2L3, SUMO1, UFD1L, UMPS, COL14A1, UQCRC1, UQCRFS1, UROD, MRPL49, VASP, VDAC1, EZR, EIF4H, NELFA, DAGLA, XPNPEP1, XRCC5, YWHAE, YWHAG, YWHAZ, SF1, ZFP36, ZNF8, CNBP, ZNF23, ZNF76, ZNF142, TRIM25, ZNF174, ZNF207, ZNF215, ZYX, DDR1, LRP8, CSDE1, DAP3, IFRD2, MANF, SLBP, PCYOX1L, DDX50, GID4, AHNAK, SPATA5L1, PDCL3, ERI3, DDX54, SECISBP2, NOC4L, ALG8, METTL16, FASTKD3, DCTPP1, CCDC86, DEK, NOL12, PRRC2A, C1orf35, RBM42, CENPO, ZNF343, DDX39B, ABHD16A, NELFE, ZXDC, FYCO1, MRPL24, C10orf76, RNF219, SNRNP25, FAT4, PLEKHF2, ZCCHC6, FASTKD1, OGFOD2, MORC4, IPO4, CCDC51, PALB2, TEFM, ZNF419, SNIP1, ASB13, ISOC2, SHCBP1, PTCD2, SLTM, CAMKMT, CPSF7, CCDC134, ZC3H14, MCMBP, ZNF672, MRM1, UBXN8, NOL10, WLS, DSN1, GREB1L, ESRP2, FAM192A, BICC1, CALM1, VCPIP1, LRRC8E, THOC7, NAA15, OPA3, HSD3B7, GRPEL1, MED28, FLAD1, CPEB4, PUS1, PDHX, CUL5, UBXN6, PRR3, CYB5B, USP5, MLF2, CALM3, APOL6, FXR1, PABPN1, CALR, ACTN4, TAF15, FBXO38, TDRD3, RCC1L, C1orf21, URM1, FIP1L1, UNC93B1, DIAPH3, TRMT1L, AKAP1, SF3A2, TRIM56, SFXN3, ARPC5L, ISG20L2, LAS1L, SLIRP, HDHD3, CANX, CLTCL1, PUDP, USP11, RBM10, KDM5C, UBL4A, ARID1A, CAPZA1, HIST1H4I, CAST, HIST1H2BG, DDX59, HIST1H2BO, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, C11orf68, HIST1H4C, HIST1H4H, HIST1H4B, HIST1H4E, HIST1H4L, TRAPPC9, HIST2H4A, INHBE, GRWD1, RBM4B, RAB34, PIP5K1A, OBSCN, MAGT1, TMEM222, TAGLN2, NSRP1, FBXO30, WDR75, CEP78, TOMM40L, UTP15, ZNF644, RPF2, ZCCHC7, TMEM164, ZCCHC9, LDOC1L, FYTTD1, POLDIP3, NOA1, COQ5, EIF1AD, ING5, UTP23, PHF6, LLPH, MIEN1, PYM1, C7orf50, MRPL45, CMSS1, SARNP, MCRIP2, HPS3, NIFK, DUSP11, DHX16, ZC3H8, CUL2, MRPL43, MAK16, TUBB6, TEAD2, HINT2, SORBS2, CAT, PRRC2B, OGT, UNC119B, BUD13, PHF5A, MINA, ZC3H10, RPUSD4, FAM73B, TMTC4, NFATC2IP, SLC35B4, UTP4, FAM104A, RELT, PPFIBP1, LSM10, RANBP3, TMEM141, PKP4, NIPSNAP1, YBX3, PPIL4, ZCCHC3, STRIP1, TUBGCP6, API5, LMO4, ZCRB1, DOCK7, HELZ2, PIR, UNK, CIPC, TANC1, GFM1, YARS, PDXK, MADD, RRP1, MKNK1, KHSRP, CAV1, GTPBP10, NOP14, RUVBL1, USO1, ACTL6A, RFXANK, RTCA, OASL, LAMTOR3, EIF3A, EIF3C, EIF3D, EIF3G, EIF3H, EIF4G3, SRSF9, CDC23, B4GALT4, SERPINH1, PNPT1, MBTPS1, EDF1, CBR1, PABPC4, RIPK2, MPDZ, RIOK3, TNFRSF11A, SUCLG1, IQGAP1, KYAT1, TMEM11, RRP36, SQSTM1, FUBP1, CDC16, DDX18, KRIT1, EIF2S2, CPNE3, HERC3, MBD4, FUBP3, TOP3B, KYNU, BTRC, USP13, FCHSD1, STBD1, CCNG1, BTBD6, EFCAB11, CCDC97, KNSTRN, ZNF622, RPL14, MAP3K6, SYT7, PYGO2, CEP95, CCT6A, CCDC189, TCEAL8, ZNF598, SPSB3, SART1, DHX57, USP14, USP2, USP10, SLC16A3, PDLIM1, BOD1, FAM50A, AIFM1, RRP9, ANKRD40, ARHGEF1, RNF185, ACBD5, HGS, ANKRD44, RPS19BP1, DEPDC7, SYT12, SMDT1, SCAF11, YTHDC1, CHMP7, ARHGEF2, RASSF9, DDX21, DEDD, ZMYM4, ZMYM3, MTDH, NOLC1, MAGI1, STRADA, TBRG4, CRLF1, BBIP1, SPECC1, PDLIM7, MAPKAPK2, DPH7, WDR46, HNRNPLL, SRSF11, ATP6V1F, SNORD22, ZNF561, ZNHIT3, EFTUD2, RPL23, TRMT10A, PPIG, KIF3B, GRHPR, ZRANB2, SNRNP40, PAXBP1, SH3BP5, KIF23, PMPCB, FXR2, SCAMP1, VPS4B, MPDU1, BAG4, BAG3, H2AFY, GTPBP1, RBM39, PDIA4, MTRF1, SEC24C, CTR9, MTFR1, TTLL4, DZIP3, SAFB2, EIF5B, IPO13, PHF14, KDM4A, BZW1, PUM1, ESPL1, USP6NL, AQR, SECISBP2L, VPRBP, SART3, CCP110, ARHGAP32, CLSTN3, BCLAF1, EIF4A3, MATR3, SNX17, DHX38, BMS1, TATDN2, TOMM20, RNF40, GIT2, ARHGAP11A, ARHGEF17, ZNF623, CEP350, PPP1R26, SETDB1, LRBA, URB1, ZC3H11A, UBAP2L, RBM19, G3BP2, RABGAP1L, CDC20, RNF10, MFN2, HELZ, CDC25A, PUM3, CRYZL1, WDR1, USP15, THRAP3, HNRNPDL, PTBP3
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