| Type | Description |
|---|---|
| Definition | firre intergenic repeating RNA element |
| Date | Results | Publications |
|---|---|---|
| 2019-12-14 10:38:00 | FIRRE is transcriptionally activated by MYC. | 30739786 |
| 2018-12-22 10:10:00 | RMST and FIRRE, genes with established roles in neurogenesis and topological organisation of chromosomal domains respectively, are processed as circular lncRNAs with only minor linear species | 29678151 |
| 2018-12-22 10:07:00 | neither the deletion of the CTCF locus nor the ectopic insertion of Firre cDNA or its ectopic expression are sufficient to alter topologically associated domains in a sex-specific or allele-specific manner | 29654311 |
| 2017-11-25 15:56:00 | this study shows a new regulatory role for NF-kappaB-responsive FIRRE in the posttranscriptional regulation of inflammatory genes in the innate immune system | 28993514 |
| Type | IDs |
|---|---|
| Synonymous | LINC01200 |
| Gene | |
| Nucleutide sequences | |
| Protein sequencees | |
| Others |
UniGene:
Hs.720385
|
| {{proteinIndex+1}} | mRNA | Protein | UniprotKB | Description | ||||
|---|---|---|---|---|---|---|---|---|
| Refseq |
{{protein.nucleotideVersion}}
Ensembl: {{protein.nucleotideEnsembl}} |
{{protein.proteinVersion}}
Ensembl: {{protein.proteinEnsembl}} |
{{uniprot}} , |
Definition: {{{protein.definition}}}Transcript Veriant:{{protein.transcriptVeriant}} Status: {{protein.status}} |
||||
| Location | {{protein.contigId}} ( {{protein.positionStart}}..{{protein.positionEnd}} , {{protein.orientation}} ) | |||||||
| Conserved domain | Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
{{conservedDomain.comments == '' || conservedDomain.comments == null ? "-" : conservedDomain.comments }} |
Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
{{conservedDomain.comments == '' || conservedDomain.comments == null ? "-" : conservedDomain.comments }} |
||||
暂无数据
| Pubmed编号 | 文献信息 | 发表日期 | 相关基因 |
|---|---|---|---|
| 30739786 |
Biochem. Biophys. Res. Commun. Xue Shi , Zhongguang Cui , Xiaodan Liu , Shaoling Wu , Ying Wu , Fang Fang , Hongguo Zhao |
2019-03-19 | - |
| 29678151 |
BMC Genomics Osagie G Izuogu , Abd A Alhasan , Carla Mellough , Joseph Collin , Richard Gallon , Jonathon Hyslop , Francesco K Mastrorosa , Ingrid Ehrmann , Majlinda Lako , David J Elliott , Mauro Santibanez-Koref , Michael S Jackson |
2018-04-20 | - |
| 29654311 |
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus. Nat Commun A Rasim Barutcu , Philipp G Maass , Jordan P Lewandowski , Catherine L Weiner , John L Rinn |
2018-04-13 | - |
| 29507755 |
Cell Discov Yanan Yue , Jun Liu , Xiaolong Cui , Jie Cao , Guanzheng Luo , Zezhou Zhang , Tao Cheng , Minsong Gao , Xiao Shu , Honghui Ma , Fengqin Wang , Xinxia Wang , Bin Shen , Yizhen Wang , Xinhua Feng , Chuan He , Jianzhao Liu |
2018-01-01 | - |
| 28993514 |
J. Immunol. Yajing Lu , Xu Liu , Minghong Xie , Mingjia Liu , Mengling Ye , Mingxuan Li , Xian-Ming Chen , Xiaoqing Li , Rui Zhou |
2017-11-15 | - |
| 27009974 |
Function and evolution of local repeats in the Firre locus. Nat Commun Ezgi Hacisuleyman , Chinmay J Shukla , Catherine L Weiner , John L Rinn |
2016-01-01 | - |
| 25887447 |
Genome Biol. Fan Yang , Xinxian Deng , Wenxiu Ma , Joel B Berletch , Natalia Rabaia , Gengze Wei , James M Moore , Galina N Filippova , Jun Xu , Yajuan Liu , William S Noble , Jay Shendure , Christine M Disteche |
2015-01-01 |
Firre,
Ctcf,
FIRRE
|
| 26283634 |
Regulatory networks of non-coding RNAs in brown/beige adipogenesis. Biosci. Rep. Shaohai Xu , Peng Chen , Lei Sun |
2015-01-01 |
Firre,
Lncbate1,
FIRRE
|
| 24463464 |
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre. Nat. Struct. Mol. Biol. Ezgi Hacisuleyman , Loyal A Goff , Cole Trapnell , Adam Williams , Jorge Henao-Mejia , Lei Sun , Patrick McClanahan , David G Hendrickson , Martin Sauvageau , David R Kelley , Michael Morse , Jesse Engreitz , Eric S Lander , Mitch Guttman , Harvey F Lodish , Richard Flavell , Arjun Raj , John L Rinn |
2014-02-01 | - |
| 22658674 |
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell Alfredo Castello , Bernd Fischer , Katrin Eichelbaum , Rastislav Horos , Benedikt M Beckmann , Claudia Strein , Norman E Davey , David T Humphreys , Thomas Preiss , Lars M Steinmetz , Jeroen Krijgsveld , Matthias W Hentze |
2012-06-08 |
GNPDA1,
SCARNA27,
GABPB1-AS1,
NFYC-AS1,
FKSG29,
PHKA2-AS1,
HDAC6,
PDCD6,
C17orf96,
LOC100287042,
MIR3652,
ARPC4-TTLL3,
ATP5J2-PTCD1,
TGIF2-C20orf24,
FARSB,
ABCC5,
ABCF2,
HUWE1,
ARPC4,
ARPC1B,
ACTR3,
ACTR1A,
LRPPRC,
TRAP1,
BCAP31,
NAMPT,
RBM12,
TOB1,
G3BP1,
SUGP2,
MBNL2,
ABI2,
CEBPZ,
ATP6AP2,
SLC25A15,
RCL1,
RBM7,
RBM6,
RBM5,
ALYREF,
PSME3,
MPHOSPH10,
NUTF2,
USPL1,
DDX39A,
STX6,
HNRNPR,
MRPS31,
RIDA,
SF3B4,
AKAP8,
STUB1,
SIGMAR1,
SMNDC1,
BCAS2,
SF3A1,
CDKN2A,
APBB3,
SMYD5,
ADAR,
EMC8,
NPM3,
HMG20A,
NOD1,
RACK1,
NDC80,
NSA2,
YAP1,
CD2BP2,
TUBGCP3,
RBM14,
EMG1,
ACAA2,
PPIE,
TAB1,
MAD2L2,
PIBF1,
SLC25A17,
NXF1,
CREB3,
LRRC41,
SYNCRIP,
ENOX2,
MYBBP1A,
DDX17,
ADARB2,
CHERP,
HYOU1,
IPO8,
NOP56,
RNASEH2A,
GLRX3,
DCTN2,
LAMTOR5,
PRDX4,
AGPAT1,
RPP30,
SLU7,
MRPL28
|
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|---|---|---|
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