[No authors listed]
Urine results from a coordinated activity of glomerular and tubular compartments of the kidney. As a footprint of these cellular functional processes, urinary exosomes, and 40-80 nm membrane vesicles released after fusion with the plasma membrane into the extracellular environment by renal epithelial cells, are a source for identification of proteins and investigation of their role in the kidney. The aim of the present study was the identification of podocyte exosome proteins based on urine immunoabsorption using podocyte-specific CR1-immunocoated beads followed by proteomic analysis using LC MS/MS techniques. This methodology allowed the identification of 1195 proteins. By using a bioinformatic approach, 27 brain-expressed proteins were identified, in which 14 out of them were newly demonstrated to be expressed in the kidney at a mRNA level, and, one of them, the COMT protein, was demonstrated to be expressed in podocytes at a protein level. These results, attesting the reliability of the methodology to identify podocyte proteins, need now to be completed by further experiments to analyze more precisely their biological function(s) in the podocytes.
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CDH2, GNPDA1, C1orf68, PDCD6IP, PDCD6, TOM1L1, CDH6, IL18BP, DPP3, SNUPN, ARPC5, CDH11, ARPC4, ARPC3, ARPC1B, ACTR3, ACTR2, TSPAN1, ARPC2, ACTR1B, ACTR1A, CDH13, PDIA6, TRAP1, PDZK1IP1, ATP6AP2, DHRS2, NUTF2, FLOT1, PSMD14, RIDA, GLYAT, ZMPSTE24, STUB1, RTN3, LANCL1, CRISP3, SIRPB1, AKR1A1, TFG, TUBA1B, BPNT1, TUBB4B, BTN2A2, NDRG1, RACK1, ST3GAL6, CPQ, WFDC2, BASP1, IFITM3, CDSN, LYPLA1, FAM3C, ACAA2, VAV3, TOMM40, BAIAP2, ATP5H, CEACAM5, CAP1, VAT1, FBLN5, CIB1, GLRX3, PROCR, ARL6IP5, ARPC1A, OLFM4, CEL, CCT7, CCT4, CCT2, NPC2, DNPH1, PAICS, MYL12A, ATP5L, YKT6, PMVK, GNA13, B3GNT2, CCT8, CETP, CFL1, PTGES3, RBBP9, MASP2, CTSC, GIPC1, AHCYL1, IQGAP2, VAMP5, CFTR, ALDH1L1, FTCD, RUVBL2, PGRMC1, FGL2, LYVE1, DHRS4, COPS8, SUB1, PRDX3, EHD1, LMAN2, ERP29, ACOT2, TMED10, COPS6, SLC27A2, SPINK5, LILRB4, KDELR2, DSTN, B4GAT1, UPK1A, CHD2, DNAJB4, PRSS23, BTN2A1, KIF3A, LSM6, ERLIN2, CHI3L1, NUDT5, NUDT3, TREH, PROSC, POLG2, PDCD10, SAT2, PACSIN2, SNX18, CHP1, SNF8, HOGA1, CD300A, PARK7, KIF12, VSIG4, TMEM106A, PHB2, TWF2, SDSL, PIK3IP1, MAL2, PGLYRP2, SLC25A25, C1QTNF5, VASN, KCTD12, CKB, CKMT1B, GINM1, MRGPRF, LRG1, DCD, AP1S1, CLU, CLIC1, CLRN3, TPP1, CLPS, CLTC, HIST4H4, SERPINA3, A1BG, ZG16B, CANT1, GGT6, SLC5A10, OSCAR, ALDH16A1, NR2C2AP, CNN2, CNP, LYPLAL1, CNTN1, FAM213B, ARL8A, ADH5, NAXE, COL4A2, CHMP4B, COL5A1, COL6A1, COL6A3, COL8A1, MITD1, FBLN7, ACMSD, ADH6, COL12A1, GALM, COL15A1, COMP, COMT, LRRC15, SCLT1, COX4I1, COX5B, ENPP6, CMBL, NUDCD2, COX7A2, HINT3, PM20D2, CP, MTPN, CPE, CLDN3, CPM, SSC4D, CPN2, LYPD2, CR1, CRABP2, CRK, CRKL, CRP, S100A16, CRYAA, CRYAB, CRYM, CRYZ, CS, MAPK14, CSF1, A2ML1, PTGR2, MDP1, MESP2, CSPG4, CSRP1, C16orf89, TOM1L2, CD300LG, CST3, CST4, CST5, CST6, CSTA, CSTB, ZNF420, NLRP4, CILP2, BROX, CTBS, SLC30A7, COMMD7, COMMD1, PROM2, CTSB, CTSD, GAREM2, CTSE, CTSG, CTSH, CTSL, CTSV, GPR155, GLIPR2, CTSZ, IGSF11, CYB5A, DAB2IP, SLC36A2, VPS37D, CYP4A11, ZDHHC15, SLC5A12, DAB2, DAD1, CD55, DAG1, GPR180, CLEC14A, DBI, ECI1, DCTD, ACE, DDC, AKR1C1, DDT, DECR1, DEFB1, CFD, COCH, FUT11, ASXL1, CYB5R3, NQO1, AFM, DLST, AGA, DNASE1, DNASE1L1, DNASE2, DPEP1, DPP4, DPP6, DPT, DPYS, AGRP, DSC1, ABAT, DSG1, DSG3, DSP, AGT, DUSP3, TOR1A, ECH1, ECHS1, ECM1, AHCY, EEF1A1, CYS1, EEF1G, EEF2, EFNA1, EFNB1, EGF, MEGF8, KRT78, RILPL2, PLBD2, EIF2S1, ANO6, AHSG, EIF4A1, EIF5A, SERPINB1, CADM4, CTTN, TMEM192, ENO1, ENPEP, AK1, EPB41L2, STOM, EPHB4, AK4, EPHX2, STX2, EPS8, ERV3-1, ESD, ALAD, ETFA, ETFB, EVPL, ALB, EXTL2, F2, F3, F11, F12, ALDH1A1, FABP1, FABP3, FABP5, ALDH2, ACSL4, FAH, FBLN1, FAT1, CCNY, FBLN2, FBN1, EFEMP1, OAF, FBP1, FAM171A1, EEF1AKMT1, FCGR2A, ALDH3B1, FCGR3A, PI16, FCGR3B, SDK1, THSD7A, FCN2, TMED4, ZSCAN23, ALDH9A1, A2M, GPC4, ALDH3A2, FGA, FGB, FGF9, ALDOA, FGG, FGL1, FH, FHIT, NID2, CLCA4, FKBP1A, MRAS, FRMPD1, FKBP2, CLSTN1, KIFAP3, ALDOB, PLA2R1, RAB18, CCT5, PTGR1, AKR7A3, RAB21, ALDOC, ENDOD1, NFASC, AKR1B1, FLNA, EFR3A, GPD1L, FLOT2, GANAB, PLCB1, MGRN1, ICOSLG, MAN2B2, NEDD4L, CLASP1, SZT2, NCSTN, COTL1, NCS1, SLC7A8, ANGPTL2, CAPN7, QPRT, SEC11A, FOLR1, HAAO, CLCF1, TSPAN15, DDAH2, DDAH1, CASP14, CARHSP1, HEBP2, CD2AP, PHLDA3, CBLC, PLD3, PLXNB2, PLA2G15, STX12, CADM1, NPAP1, PITPNB, FLRT2, MTCH2, FRK, ATP6V0D2, ATP6V1C2, FSHB, ALPL, FTH1, FTL, FUCA1, FUCA2, FUT6, FAM26E, GAA, TMEM256, LRRC57, NUDT14, NEGR1, PGLS, QPCT, SVIP, GCA, GALC, SAMM50, GALE, PRDX5, METTL7A, GALK1, ABHD14A, MXRA5, GALNS, GALNT2, HSPA12A, AMBP, CLIC4, GAMT, GAPDH, SNED1, TKFC, KLK13, TCTN3, GARS, GAS6, PHGDH, B3GAT3, FBXO2, AOC1, HIBCH, GATM, GBA, FAM162A, GC, BLOC1S1, MYOF, PCOLCE2, OSTF1, GDI2, GGT1, B4GALT1, GJA1, RNF11, PPA2, GHITM, GK, SDCBP2, NAAA, GLA, GPC3, GLB1, CHMP2A, PCDH11X, EIF3K, GLG1, PCSK1N, GLO1, GLRX, GLUL, GM2A, AMY1A, GNA11, GNAI2, AMY1B, GNAQ, GNAS, GNAZ, GNB1, AMY1C, GNB2, GNG5, GNG7, GNG10, AMY2A, GNS, GOT1, GOT2, GPC1, GPD1, GPI, IGKV1-5, ANG, MUC19, HID1, VMO1, ZNF763, SMIM24, IGHV3-23, EPHA10, RNF149, IAH1, CRB2, C9orf142, GPX1, GPX2, GPX3, GPX4, GRB2, IGKV3D-11, IGKV3-20, LAMTOR2, GRN, C11orf54, ANPEP, CHMP4A, PHPT1, GRM5, SLC25A5, PDIA3, GSN, GSR, GSS, GSTA1, GSTM2, GSTM3, GSTP1, GSTT1, PACSIN3, OLA1, UQCR10, GUCA2A, GUCA2B, GUSB, GYG1, GMPPB, GMPPA, GYPA, SNX12, PADI1, DPP7, TRHDE, PSAT1, EFEMP2, HIST1H1E, HIST1H1B, ANXA1, ANXA2, HAGH, HADHB, HBA1, HBA2, HBM, HBB, SERPIND1, ANXA3, ANXA4, HEXA, HEXB, CFHR1, HGD, ANXA5, NT5C, CD209, EHD4, TAX1BP3, ANXA6, UBE2K, HINT1, ANXA7, HLA-C, HLA-DMA, ANXA11, HLA-DRA, ANXA13, HLA-DRB1, ACACA, HNRNPC, HNRNPD, HP, HPCAL1, HPD, HPGD, HPN, HPRT1, APCS, HPX, HRG, HSPA5, HSPA8, HSPA9, HSPB1, HSP90AA1, HSPE1, DNAJB1, HSPG2, APOA1, APOA2, APOA4, HYAL1, HIST2H2BD, FAM151A, ICAM2, JMJD8, ZBTB8OS, SLC6A19, MYLK4, BEX5, APOC1, FREM2, IDH1, ACADM, CD300E, IDUA, CFI, NCCRP1, APOC2, APOC3, APOD, IGF2, IGF2R, APOE, IGFALS, IGFBP2, IGFBP3, GEN1, IGFBP6, IGFBP7, IGHA1, RTN4RL2, IGHG1, APOH, IGHM, JCHAIN, APP, IGKC, APRT, ZNF445, LILRA5, IGLC1, IGLL1, IL1RN, IL6ST, AQP1, IL10RB, AQP2, IL18, IMPA1, ACADSB, INHBC, INPP5A, ISLR, ITGA3, ITGAM, ITGAV, ITGB1, EIF6, ITGB5, ITGB6, ITGB8, ITIH1, ITIH4, JUP, GSTK1, TRIM23, TMEM205, SBSN, AGRN, RAB15, ARF3, KCNMA1, ARF4, KHK, KLK1, ARF6, ACAT1, KNG1, ARG1, KPNA4, KRT1, KRT2, KRT9, KRT10, KRT16, RHOA, C6orf120, C1QTNF9B, NHLRC3, KRT34, SMIM1, TRABD2B, HRNR, FLG2, FAM212A, KRT86, RHOC, RND3, LAIR1, LAMA2, LAMA5, RHOG, PTRHD1, LAMC1, LAMP1, LAMP2, RPSA, ARHGAP1, FLJ44635, ELFN1, LASP1, LBP, LCAT, LCK, LCN1, LCN2, LDHA, MUC21, LDHB, LGALS1, LGALS3, LGALS3BP, ARHGDIA, LGALS8, LGALS9, LHB, ARHGDIB, LIPA, ARL1, ARL2, LPL, UFSP1, ARL3, LRP2, LTBP2, LTF, BCAM, LUM, LYN, LYZ, TACSTD2, EPCAM, NBR1, MARCKS, ARSA, ARSB, MAN1A1, MAN2A1, MAN2B1, MAOB, MAP4, DNAJB3, ARSD, ARSF, MCF2, MDH1, MDH2, MFAP4, MFGE8, MELTF, MGAT1, MGAT5, MGST3, ASAH1, MIF, MME, MMP7, MMP9, ALDH6A1, MOCS2, MPI, MPO, MPST, KLK14, KLK12, ASNA1, AQP7P3, ASPA, ASS1, MSRA, MST1, KPRP, MTAP, NUDT1, MTHFD1, MTM1, MUC1, MVK, SERPINC1, MYH9, MYL6, MYLK, MYO1C, MYO1D, MYO6, MYO7B, NACA, NAGA, NAGLU, NAIP, NUBP1, NCAM1, NCL, NDUFA4, NDUFB1, NDUFB3, NDUFB4, NDUFB9, NDUFB10, SEPT2, NEDD8, NEU1, ATP1A1, NID1, ATP1B1, NIT1, ACO1, NME1, NME3, NQO2, PNP, FXYD2, NPHS1, NPR3, NRAS, NSF, DDR2, OCRL, OLR1, OPCML, ATP5A1, CRNN, ORM1, CLDN11, ALDH7A1, PEBP1, RRM2B, PAFAH1B2, PAFAH1B3, COL5A3, PRDX1, PAH, ATP5B, PAM, F11R, HEBP1, PCBD1, ATP5C1, PCBP1, PCBP2, PCDHGC3, TMED7, ISOC1, HDDC2, VPS36, GLOD4, SERPINA5, PCK1, LAP3, PCK2, DERA, NDUFA13, CRYL1, PLLP, SH3GLB1, PCMT1, GOLGA7, COPS4, VPS28, HAO2, DCXR, PCOLCE, CHMP1A, GP6, GLTP, CRIM1, SHISA5, C1RL, GOLM1, CD320, PCDH12, REEP2, SPTBN5, PLA1A, TEX264, ATP6V1D, PCYOX1, C11orf73, TRMT112, UFC1, CHMP5, ATP5F1, VTA1, RAB14, UFM1, FAM49B, PDGFRB, CUTA, ATP6V1H, PDHB, PPIL1, CHMP3, HSPB11, TPPP3, VPS29, GPRC5B, RAB23, CAB39, SLC26A4, CMPK1, UPB1, PDZK1, SERPINF1, CALML5, PEPD, PFDN2, PFKL, PFKM, PFN1, PFN2, PGAM1, ACP1, PGC, PGD, PGK1, ATP6V1A, ABCB1, PHB, SLC25A3, ATP6V1B1, ATP6V1B2, SERPINA1, PI3, SERPINA4, SERPINB5, SERPINB6, SERPINI1, SERPINB13, ATP6V1C1, PIGR, ATP6V1E1, PIN4, PIP, PITPNA, PKM, PKP1, ACP2, PLAT, PLAU, PLAUR, PLCD1, PLEC, PLG, SERPINF2, ATP6V0A1, PLP2, PLS1, PLSCR1, ATP6AP1, PMM2, CDHR5, ATP5O, A4GALT, FAM3B, UBL3, NANS, PODXL, ACP5, POLG, GNG2, SIAE, PON1, TOLLIP, HEATR5B, CPVL, RHOF, ROBO4, UGT1A6, MXRA8, UGT1A9, ARL15, PPA1, TMEM106B, MPHOSPH8, EPDR1, CTSA, PPIA, PPIB, PPIC, GIPC2, CDHR2, CKMT1A, EPS8L1, FNBP1L, CMTM6, DUSP23, SLC35F6, C1orf123, PPP1CA, MARC2, LAMTOR1, PHIP, PPP1R7, WDR60, TMEM33, PPP2CB, PNPO, MOB1A, ACPP, PPP2R4, KIRREL, CCDC25, BOLA2, UEVLD, PEF1, CPPED1, LIN7C, PPP3CC, PPT1, HIST2H4B, PRCP, TRPV6, H2AFY2, TRIM36, PRG2, NAGK, KIF27, MIOX, ITLN1, OTUB1, SLC39A4, PRKACA, PRKACB, PRKAG1, DNAJC11, VPS35, CNDP2, SEPT11, CDK5RAP2, FAM63A, PRKCD, AXL, CISD1, ACOT13, ECHDC1, SLC22A11, ASH1L, GPRC5C, APOM, MAPK1, MAPK3, GNG12, MYDGF, PDGFC, MAP2K1, PCDHGC5, DNAJC3, PRNP, SUSD2, AZGP1, PRPS2, PRSS1, PRSS3, PRSS8, HTRA1, PSAP, MUC13, SAR1A, PSG4, B2M, RETN, PSMA2, PSMA3, PSMA4, PSMA5, PSMA6, PSMA7, PSMB1, BDH2, PSMB2, PSMB3, LXN, PSMB5, PSMB6, PSMB7, NIT2, PSMB8, RGMA, POGLUT1, CDC42SE2, AKR1B10, PDXP, TWSG1, PSMC6, PSMD1, CASC5, PLSCR4, RAB25, CD248, CHMP1B, PSMD7, APMAP, RTN4, PSMD8, SLURP1, SLC44A2, PSMD11, PSMD13, PSME1, PSME2, PTGDS, TMEM27, S100A14, RAB22A, ABHD6, NDRG2, GALNT16, PTH1R, SERINC1, TAOK1, PTMA, QSOX1, PTPN13, PTPRF, PTPRG, PTPRJ, PTPRO, PTPRS, BAX, PVALB, PVR, CTDSP1, NECTIN2, ENOPH1, CACTIN, QDPR, RAB2A, RAB6A, RAB27B, RAB5C, RAC1, RALB, RAN, RAP1A, RAP1B, RAP2A, RARS, RARRES2, SCPEP1, RBP4, REG1A, RENBP, RFNG, BCL2L2, RHEB, C12orf10, RNASE1, RNASE2, RNASE3, RNASE4, RNASE6, RNH1, RNPEP, PAPPA2, RP2, RPL7, RPL7A, RPL11, RPL12, RPL15, RPL22, RPL23A, RPL24, RPL27, RPL30, RPL31, RPLP0, RPLP1, RPLP2, RPS2, RPS3, RPS4X, RPS5, RPS7, RPS8, RPS9, RPS10, RPS13, RPS14, RPS15A, RPS17, RPS18, RPS19, RPS20, RPS25, RPS26, RPS28, RRAS, RRM1, RSU1, RYR2, S100A4, S100A6, S100A7, S100A8, S100A9, S100A10, S100A11, S100A13, S100P, CFB, SERPINB3, SERPINB4, BGN, SCP2, BHMT, BID, SDC4, SDCBP, CXCL12, SDHB, XPNPEP3, SECTM1, RBKS, PBLD, GFRA4, MAGEF1, TMBIM1, TINAGL1, SFRP1, BLMH, PDLIM2, SRSF1, SRSF2, SRSF7, MPP5, BLVRA, SGSH, SH3BGRL, BLVRB, SH3GL2, RPL13AP3, SH3GL3, SHBG, SHMT1, TBC1D15, EPS8L2, ST6GAL1, ST3GAL4, VWA1, SKP1, SLC2A5, SLC3A1, SLC3A2, PCDH15, SLC5A1, SLC5A2, LGALS7B, BOLA2B, SLC9A3, SLC12A1, SLC12A3, SLC25A1, SLPI, DLK2, LYNX1, SMPD1, SMS, SUMO3, SNRPB, SNRPD2, SNRPD3, SNRPE, SNX2, SNTB2, SOD1, SOD2, SOD3, SORD, SORL1, DST, SPINT1, SPP2, SPP1, SPR, SPRR1B, BPHL, SPRR3, BPI, SRC, SRI, AKR1D1, SRP9, SRP14, ST13, ST14, STX3, STX4, STXBP2, SULT1C2, BSG, BST1, BST2, VAMP2, SYPL1, BTD, TAC3, TALDO1, TBCA, SERPINA7, TCEB2, TCN2, TF, TFF2, TFF3, TGFBR3, TGM3, THBS1, THRB, THY1, TIAL1, TIMP1, TIMP2, TIMP3, TKT, SERPING1, TMPRSS2, CLDN5, C1QA, CLEC3B, ACTG1, C1QB, C1QC, TNXB, C1S, TPI1, TPMT, C3, C4B, TSG101, CAPN5, TST, TTR, ANXA8L1, CCDC30, TXN, C7, UBA1, UBE2L3, C8G, UBE2N, UBE2V1, UBE2V2, UCHL1, UCHL3, UPK1B, C9, UGP2, UGT2B7, UMOD, COL14A1, UPK2, UPK3A, UQCRC2, VCAM1, VCP, VDAC1, VDAC2, VDAC3, VIL1, EZR, VTN, VWF, WNT9A, XPC, XPNPEP1, XPNPEP2, YES1, YWHAE, PTTG1IP, ZNF711, CA1, CA2, CA4, DDR1, PTP4A1, CACNA2D1, NPHS2, SEMA3B, RAB7A, GGCT, C20orf195, REEP5, TMEM109, GDPD3, CALB1, FAM65A, FAT4, CHMP6, OGFOD3, PPCS, VPS37B, SH3D21, MYH14, MMRN2, AGMAT, CLMP, PIP4K2C, HDAC11, KIAA0319L, PSCA, CALM1, SPG11, NAA50, CUBN, EFHD1, SPHKAP, PDGFD, DNAJC5, PDCD1LG2, CD276, CALM2, PTP4A2, SLC44A4, UPK3B, COL18A1, CALM3, COLEC12, CALR, ACTN4, URM1, NECTIN4, CAB39L, ITM2C, AMN, ARPC5L, CAMP, CANX, CAPG, PUDP, CAPN1, CAPN2, CAPNS1, CAPS, HIST1H4I, CAPZA2, FZD4, CAPZB, HIST1H2BG, FCRL4, HIST1H2BF, SH3BGRL3, HIST1H2BE, RAB33B, HIST1H2BI, HIST1H2BC, HIST1H3A, HIST1H3D, HIST1H3C, HIST1H3E, HIST1H3I, AIF1L, HIST1H3G, HIST1H3J, HIST1H3H, HIST1H3B, AKR1E2, HIST1H4A, HIST1H4D, HIST1H4F, HIST1H4K, HIST1H4J, HIST1H4C, HIST1H4H, DYNLRB2, HIST1H4B, HIST1H4E, HIST1H4L, SH3BGRL2, HIST2H4A, RBP5, RAB34, HMCN1, NCALD, SPARCL1, TAGLN2, ARL6, ANXA9, ANTXR1, STX7, BBOX1, LTBP4, PRADC1, STK24, NTPCR, FAM213A, MIEN1, VPS25, CYSTM1, CNFN, ATRN, GNPTG, TPST2, RNASE7, CAT, TXNDC17, USMG5, ABHD14B, HAVCR2, PLXDC2, RELT, HIST1H2AH, CPZ, TUBGCP6, DNAJC14, SCIN, KMO, PDXK, RUVBL1, PLPP1, PLPP3, RNASET2, AKR1C3, ABCB11, LAMTOR3, DYNLL1, SERPINA6, SLC4A4, VAMP8, SERPINH1, EDF1, CTSF, SNX3, CBR1, SNAP23, NAPG, NAPA, GGACT, PEX11B, SUCLG1, CREG1, BANF1, ACTN2, IQGAP1, CD84, GGH, WISP2, PROM1, FCGBP, PROZ, VNN1, CPNE3, RAB29, HIST1H3F, MGAM, WASL, SERPINB12, MVB12B, SELENBP1, PGLYRP1, RHOT2, TAF1B, HS6ST2, CLIC3, NAT8, SEMA5A, UBE2M, IFT20, SPAG9, SCRN2, GPRC5A, SLC13A2, CLDN2, CCT6A, ESAM, ATP6V0D1, KRT75, ACVR1B, SYNGR2, FIBP, MYADM, ACY3, C11orf52, SNX29, CD5L, RAB11B, CHMP4C, CD7, ITGB1BP1, ARRDC1, CD9, ADGRG1, CD14, ATP6V1F, DMKN, NAPRT, PTER, IGSF8, B4GALT5, MVB12A, RPL23, SLC9A3R2, TXNL1, SLIT2, SLC22A6, KL, RAB9A, SLC9A3R1, ADIPOQ, KIF3B, PPT2, COX5A, GRHPR, SLC22A13, CD27, SEP15, TMPRSS11D, RP1L1, ITM2B, GSTO1, CD33, NAPSA, SCARB2, FXR2, GDF15, EEF1E1, ACY1, VPS4B, MPDU1, TP53I3, ATP6V1G1, ATP5J2, ENTPD6, H2AFY, VPS26A, MINPP1, ENTPD5, PRDX6, CD47, GDA, CD59, CD63, CROCC, ACYP1, CLSTN3, CD81, IST1, PSMD6, TBC1D4, XYLB, MVP, CDC42, HNRNPDL, CDH1
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