| Type | Description |
|---|---|
| Definition | transcription factor protein |
| Date | Results | Publications |
|---|---|---|
| 2019-01-16 10:02:00 | Tbx2/3 (Ci-Tbx2/3) requires Ci-Bra for its role in Ciona notochord development | 23674602 |
| 2016-06-04 10:24:00 | We found that most Ciona notochord CRMs relied upon variable combinations of binding sites for the transcription factors Brachyury and/or Foxa2, which can act either synergistically or independently from one another | 26684323 |
| 2014-06-07 11:04:00 | Our data suggest that the brachyury Gly177Asp SNP is not involved in the risks of skull-base chordoma, at least in the Chinese population | 24232574 |
| 2014-05-10 13:50:00 | Ciona Brachyury (Ci-Bra) controls most of its targets directly, through non-palindromic binding sites that function either synergistically or individually to activate early- and middle-onset genes, respectively. | 24204212 |
| 2010-01-21 00:00:00 | This work presents evidence of a synergistic interaction between Brachyury and FoxA in the activation of an individual notochord cis-regulatory modules, and highlights the importance of transcription factor binding site arrangement for its function. | 19820186 |
| Type | IDs |
|---|---|
| Synonymous | T, bra |
| Gene |
UniProtKB-ID:
Q4H3U3_CIOIN
UniprotKB:
Q4H3U3
UniParc:
UPI00005258A7
EMBL:
AB210329
KO:
cin:778911
|
| Nucleutide sequences |
EMBL-CDS:
BAE06334.1
|
| Protein sequencees |
RefSeq:
NP_001071946.1
|
| Others |
UniRef100:
UniRef100_Q4H3U3
UniRef90:
UniRef90_F6RP59
UniRef50:
UniRef50_F6RP59
UniGene:
Cin.14233
|
| {{proteinIndex+1}} | mRNA | Protein | UniprotKB | Description | ||||
|---|---|---|---|---|---|---|---|---|
| Refseq |
{{protein.nucleotideVersion}}
Ensembl: {{protein.nucleotideEnsembl}} |
{{protein.proteinVersion}}
Ensembl: {{protein.proteinEnsembl}} |
{{uniprot}} , |
Definition: {{{protein.definition}}}Transcript Veriant:{{protein.transcriptVeriant}} Status: {{protein.status}} |
||||
| Location | {{protein.contigId}} ( {{protein.positionStart}}..{{protein.positionEnd}} , {{protein.orientation}} ) | |||||||
| Conserved domain | Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
{{conservedDomain.comments == '' || conservedDomain.comments == null ? "-" : conservedDomain.comments }} |
Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
{{conservedDomain.comments == '' || conservedDomain.comments == null ? "-" : conservedDomain.comments }} |
||||
暂无数据
| Pubmed编号 | 文献信息 | 发表日期 | 相关基因 |
|---|---|---|---|
| 26684323 |
Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet Diana S José-Edwards , Izumi Oda-Ishii , Jamie E Kugler , Yale J Passamaneck , Lavanya Katikala , Yutaka Nibu , Anna Di Gregorio |
2015-12-01 | - |
| 24204212 |
PLoS Biol Lavanya Katikala , Hitoshi Aihara , Yale J Passamaneck , Stefan Gazdoiu , Diana S José-Edwards , Jamie E Kugler , Izumi Oda-Ishii , Janice H Imai , Yutaka Nibu , Anna Di Gregorio |
2013-10-01 | - |
| 23674602 |
Development Diana S José-Edwards , Izumi Oda-Ishii , Yutaka Nibu , Anna Di Gregorio |
2013-06-01 |
tbx2/3,
bra
|
| 24232574 |
Int J Mol Sci Zhen Wu , Ke Wang , Liang Wang , Jie Feng , Shuyu Hao , Kaibing Tian , Liwei Zhang , Guijun Jia , Hong Wan , Junting Zhang |
2013-01-01 |
brachyury
|
| 19820186 |
Development Yale J Passamaneck , Lavanya Katikala , Lorena Perrone , Matthew P Dunn , Izumi Oda-Ishii , Anna Di Gregorio |
2009-11-01 |
brachyury,
foxa-a
|
| 19217895 |
Dev Biol Matthew P Dunn , Anna Di Gregorio |
2009-04-15 | - |
| 19019990 |
Brachyury null mutant-induced defects in juvenile ascidian endodermal organs. Development Shota Chiba , Di Jiang , Noriyuki Satoh , William C Smith |
2009-01-01 |
brachyury
|
| 16141696 |
An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Zool. Sci. Yutaka Satou , Takeshi Kawashima , Eiichi Shoguchi , Akie Nakayama , Nori Satoh |
2005-08-01 |
creb/atf-c,
LOC100135651,
mnt-like,
ci-cadherin,
ci-hmg20,
ci-irf-like-2,
vanabin4,
vanabin5,
ci-zf(ubr)-5,
dkc1,
zf(cchc)-13,
ins-l1,
zf(c2h2)-128,
zf(c3h/c2h2)-1,
zf(cchc)-26,
zf(cchc/c2h2)-1,
LOC100174990,
LOC100174991,
LOC100174994,
LOC100175009,
LOC100175016,
LOC100175053,
LOC100175058,
LOC100175062,
LOC100175086,
LOC100175104,
LOC100175157,
LOC100175205,
LOC100175245,
LOC100175260,
LOC100175265,
LOC100175270,
LOC100175284,
LOC100175300,
LOC100175320,
LOC100175331,
LOC100175369,
LOC100175378,
LOC100175384,
LOC100175393,
LOC100175435,
LOC100175437,
LOC100175454,
LOC100175467,
LOC100175477,
LOC100175484,
LOC100175539,
LOC100175548,
LOC100175574,
LOC100175583,
LOC100175596,
LOC100175600,
LOC100175612,
LOC100175623,
LOC100175630,
LOC100175658,
LOC100175683,
LOC100175700,
LOC100175710,
LOC100175734,
LOC100175740,
LOC100175746,
LOC100175798,
LOC100175809,
LOC100175824,
LOC100175846,
LOC100175868,
LOC100175876,
LOC100175891,
LOC100175901,
LOC100175926,
LOC100175929,
LOC100175959,
LOC100175963,
LOC100175966,
LOC100175973,
LOC100176027,
LOC100176028,
LOC100176062,
LOC100176073,
LOC100176091,
LOC100176098,
LOC100176113,
LOC100176122,
LOC100176124,
LOC100176132,
LOC100176175,
c3ar,
LOC100176185,
LOC100176205,
LOC100176230,
LOC100176236,
LOC100176245,
LOC100176252,
LOC100176254,
LOC100176271,
LOC100176298,
LOC100176302,
LOC100176321
|
| 15269171 |
Development Kaoru S Imai , Kyosuke Hino , Kasumi Yagi , Nori Satoh , Yutaka Satou |
2004-08-01 |
fxr,
lass6,
pias,
deltex,
lag1-like3,
nfyb,
creb/atf-c,
msxb,
mnt-like,
ci-hmg20,
ci-irf-like-2,
ci-foxb,
ckn1,
fuse,
hox13,
LOC100169897,
p53/p73-a,
foxl2,
fz4,
foxo,
tbx15/18/22,
ck2b,
pax1/9,
not7,
pax6,
pax258,
nr1,
otx2,
hoxa2,
mnx,
hox5,
titf1,
hox3,
dll-b,
prx1,
pitx,
fgfr,
ephd,
LOC445709,
ephe,
soxB2,
soxB1,
soxF,
wnt3,
ets,
hox1,
hox10,
cifrz,
soxC,
foxE,
wnt5,
elk,
tgfbr-ic,
gataa,
su(h),
isl,
LOC445804,
cibeta-catenin,
hox4,
dll-a,
dll-c,
pou-iv,
ci-prd-a,
ci-btf3,
wnt-a,
ephrin-a,
hox2,
rel1,
n,
ci-mytf,
atbf,
vdr-b,
LOC778534,
af10-like,
ahr,
LOC778537,
ap-2-like1,
ap4,
aristaless,
arnt,
LOC778542,
atf2/7,
atf3,
atf4/5,
LOC778546,
LOC778547,
axin,
bach,
LOC778550,
LOC778551,
LOC778552,
LOC778553,
bmp2/4,
bmp5/7-like,
LOC778556,
c/ebpbeta/delta/epsilon,
cagf9,
cbf,
cir
|
| 12736827 |
Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Dev. Genes Evol. Yutaka Satou , Nori Satoh |
2003-06-01 |
fxr,
lass6,
pias,
deltex,
lag1-like3,
nfyb,
creb/atf-c,
msxb,
mnt-like,
ci-hmg20,
ci-irf-like-2,
ci-foxb,
ckn1,
fuse,
hox13,
LOC100169897,
p53/p73-a,
foxl2,
fz4,
foxo,
tbx15/18/22,
ck2b,
pax1/9,
not7,
pax6,
pax258,
nr1,
otx2,
hoxa2,
mnx,
hox5,
titf1,
hox3,
dll-b,
prx1,
pitx,
fgfr,
ephd,
LOC445709,
ephe,
soxB2,
soxB1,
soxF,
wnt3,
ets,
hox1,
hox10,
cifrz,
soxC,
foxE,
wnt5,
elk,
tgfbr-ic,
gataa,
su(h),
isl,
LOC445804,
cibeta-catenin,
hox4,
dll-a,
dll-c,
pou-iv,
ci-prd-a,
ci-btf3,
wnt-a,
ephrin-a,
hox2,
rel1,
n,
ci-mytf,
atbf,
vdr-b,
LOC778534,
af10-like,
ahr,
LOC778537,
ap-2-like1,
ap4,
aristaless,
arnt,
LOC778542,
atf2/7,
atf3,
atf4/5,
LOC778546,
LOC778547,
axin,
bach,
LOC778550,
LOC778551,
LOC778552,
LOC778553,
bmp2/4,
bmp5/7-like,
LOC778556,
c/ebpbeta/delta/epsilon,
cagf9,
cbf,
cir
|
| 排名 | 科研单位 | 文献 |
|---|---|---|
| {{affIndex+1}} |
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|---|---|---|
| {{authorIndex+1}} |
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