An integrated database of the ascidian, Ciona intestinalis: towards functional genomics.
[No authors listed]
摘要
An integrated genome database is essential for future studies of functional genomics. In this study, we update cDNA and genomic resources of the ascidian, Ciona intestinalis, and provide an integrated database of the genomic and cDNA data by extending a database published previously. The updated resources include over 190,000 ESTs (672,396 in total together with the previous ESTs) and over 1,000 full-insert sequences (6,773 in total). In addition, results of mapping information of the determined scaffolds onto chromosomes, ESTs from a full-length enriched cDNA library for indication of precise 5'-ends of genes, and comparisons of SNPs and indels among different individuals are integrated into this database, all of these results being reported recently. These advances continue to increase the utility of Ciona intestinalis as a model organism whilst the integrated database will be useful for researchers in comparative and evolutionary genomics.
KEYWORDS: {{ getKeywords(articleDetailText.words) }}
基因功能
- {{$index+1}}.{{ gene }}
基因
creb/atf-c, LOC100135651, mnt-like, ci-cadherin, ci-hmg20, ci-irf-like-2, vanabin4, vanabin5, ci-zf(ubr)-5, dkc1, zf(cchc)-13, ins-l1, zf(c2h2)-128, zf(c3h/c2h2)-1, zf(cchc)-26, zf(cchc/c2h2)-1, LOC100174990, LOC100174991, LOC100174994, LOC100175009, LOC100175016, LOC100175053, LOC100175058, LOC100175062, LOC100175086, LOC100175104, LOC100175157, LOC100175205, LOC100175245, LOC100175260, LOC100175265, LOC100175270, LOC100175284, LOC100175300, LOC100175320, LOC100175331, LOC100175369, LOC100175378, LOC100175384, LOC100175393, LOC100175435, LOC100175437, LOC100175454, LOC100175467, LOC100175477, LOC100175484, LOC100175539, LOC100175548, LOC100175574, LOC100175583, LOC100175596, LOC100175600, LOC100175612, LOC100175623, LOC100175630, LOC100175658, LOC100175683, LOC100175700, LOC100175710, LOC100175734, LOC100175740, LOC100175746, LOC100175798, LOC100175809, LOC100175824, LOC100175846, LOC100175868, LOC100175876, LOC100175891, LOC100175901, LOC100175926, LOC100175929, LOC100175959, LOC100175963, LOC100175966, LOC100175973, LOC100176027, LOC100176028, LOC100176062, LOC100176073, LOC100176091, LOC100176098, LOC100176113, LOC100176122, LOC100176124, LOC100176132, LOC100176175, c3ar, LOC100176185, LOC100176205, LOC100176230, LOC100176236, LOC100176245, LOC100176252, LOC100176254, LOC100176271, LOC100176298, LOC100176302, LOC100176321, LOC100176323, LOC100176326, LOC100176328, LOC100176369, LOC100176400, LOC100176408, LOC100176438, LOC100176467, LOC100176470, LOC100176479, LOC100176517, LOC100176519, LOC100176527, LOC100176528, LOC100176539, LOC100176561, LOC100176577, LOC100176585, LOC100176604, LOC100176614, LOC100176636, LOC100176641, LOC100176654, LOC100176657, LOC100176678, LOC100176681, LOC100176693, LOC100176696, LOC100176702, LOC100176766, LOC100176791, LOC100176815, LOC100176821, LOC100176846, LOC100176861, LOC100176862, LOC100176913, LOC100176944, LOC100176946, LOC100176958, LOC100176985, LOC100177026, LOC100177034, LOC100177037, LOC100177048, LOC100177105, LOC100177120, LOC100177127, LOC100177146, LOC100177147, LOC100177149, LOC100177179, LOC100177186, LOC100177199, LOC100177210, LOC100177223, LOC100177228, LOC100177232, LOC100177237, LOC100177276, LOC100177284, LOC100177287, LOC100177311, LOC100177354, LOC100177367, LOC100177371, LOC100177378, LOC100177389, LOC100177392, LOC100177400, LOC100177403, LOC100177448, LOC100177456, LOC100177466, fz4, LOC100177472, LOC100177495, LOC100177502, LOC100177509, LOC100177514, LOC100177531, LOC100177545, LOC100177557, LOC100177559, LOC100177567, LOC100177570, LOC100177571, LOC100177578, LOC100177609, LOC100177614, LOC100177615, LOC100177652, LOC100177653, LOC100177654, LOC100177670, LOC100177691, LOC100177696, LOC100177699, LOC100177702, LOC100177719, LOC100177728, LOC100177745, LOC100177749, LOC100177775, LOC100177787, LOC100177805, LOC100177846, LOC100177849, LOC100177895, LOC100177910, LOC100177911, LOC100177934, LOC100177936, LOC100177939, LOC100177943, LOC100177946, LOC100177959, LOC100177964, LOC100177985, LOC100177997, LOC100178023, LOC100178067, LOC100178068, LOC100178071, LOC100178077, LOC100178108, LOC100178115, LOC100178117, LOC100178202, LOC100178210, LOC100178221, LOC100178232, LOC100178235, LOC100178249, LOC100178279, LOC100178312, LOC100178342, LOC100178404, LOC100178414, LOC100178422, LOC100178449, LOC100178475, LOC100178557, LOC100178567, LOC100178570, LOC100178578, LOC100178595, LOC100178596, LOC100178597, LOC100178650, LOC100178669, LOC100178674, LOC100178689, LOC100178705, LOC100178711, LOC100178714, LOC100178741, LOC100178763, LOC100178807, LOC100178816, LOC100178832, LOC100178858, LOC100178888, LOC100178892, LOC100179032, LOC100179057, LOC100179066, LOC100179081, LOC100179088, LOC100179092, LOC100179095, LOC100179104, LOC100179124, LOC100179133, LOC100179143, LOC100179146, LOC100179155, LOC100179163, LOC100179169, LOC100179177, LOC100179182, LOC100179185, LOC100179189, LOC100179217, LOC100179242, LOC100179257, LOC100179263, LOC100179273, LOC100179277, LOC100179308, LOC100179370, LOC100179387, LOC100179388, LOC100179389, LOC100179393, LOC100179436, LOC100179438, LOC100179443, LOC100179457, LOC100179464, LOC100179466, LOC100179470, LOC100179475, LOC100179501, LOC100179503, LOC100179555, LOC100179558, LOC100179573, LOC100179583, LOC100179615, LOC100179625, LOC100179627, LOC100179634, LOC100179638, LOC100179652, LOC100179658, LOC100179682, LOC100179703, LOC100179712, LOC100179735, LOC100179747, LOC100179766, LOC100179769, LOC100179780, LOC100179790, LOC100179803, LOC100179818, LOC100179823, LOC100179838, LOC100179855, LOC100179858, LOC100179882, LOC100179894, LOC100179897, LOC100179944, LOC100179952, LOC100179953, LOC100179960, LOC100179962, LOC100179977, LOC100179981, LOC100179991, LOC100180000, LOC100180011, LOC100180022, LOC100180086, LOC100180088, LOC100180093, LOC100180095, LOC100180156, LOC100180168, LOC100180180, LOC100180182, LOC100180185, LOC100180199, LOC100180205, LOC100180220, LOC100180223, LOC100180292, LOC100180294, LOC100180306, LOC100180321, LOC100180346, LOC100180351, LOC100180368, LOC100180378, LOC100180386, LOC100180397, LOC100180401, LOC100180404, LOC100180411, LOC100180429, LOC100180433, LOC100180463, LOC100180468, LOC100180481, LOC100180510, LOC100180537, LOC100180569, LOC100180588, LOC100180591, LOC100180601, LOC100180637, LOC100180685, LOC100180717, LOC100180738, LOC100180747, LOC100180752, LOC100180755, LOC100180787, LOC100180818, LOC100180861, LOC100180873, LOC100180875, LOC100180919, LOC100181028, LOC100181029, LOC100181032, LOC100181041, LOC100181072, LOC100181083, LOC100181091, LOC100181117, LOC100181146, LOC100181149, LOC100181171, LOC100181187, LOC100181202, LOC100181210, LOC100181241, LOC100181257, LOC100181258, LOC100181274, LOC100181283, LOC100181315, LOC100181319, LOC100181336, LOC100181354, LOC100181355, LOC100181361, LOC100181364, LOC100181403, LOC100181454, LOC100181458, LOC100181474, LOC100181494, LOC100181505, LOC100181509, capza, LOC100181542, LOC100181551, LOC100181585, LOC100181589, LOC100181590, LOC100181606, LOC100181638, LOC100181643, LOC100181655, LOC100181670, LOC100181673, LOC100181683, LOC100181694, LOC100181696, LOC100181701, LOC100181726, LOC100181746, LOC100181747, LOC100181753, LOC100181764, LOC100181776, LOC100181804, LOC100181831, LOC100181837, LOC100181840, LOC100181842, LOC100181855, LOC100181856, LOC100181877, LOC100181878, LOC100181980, LOC100182007, LOC100182009, LOC100182013, LOC100182021, LOC100182022, LOC100182029, LOC100182048, LOC100182052, LOC100182055, LOC100182071, LOC100182084, LOC100182085, LOC100182086, LOC100182097, LOC100182102, LOC100182121, LOC100182170, LOC100182190, LOC100182198, LOC100182205, LOC100182206, LOC100182234, LOC100182236, LOC100182252, LOC100182255, LOC100182256, LOC100182280, LOC100182304, LOC100182311, LOC100182324, LOC100182325, LOC100182328, LOC100182332, LOC100182336, LOC100182354, LOC100182378, LOC100182382, LOC100182403, LOC100182411, LOC100182412, LOC100182422, LOC100182426, LOC100182433, LOC100182468, LOC100182480, LOC100182507, LOC100182542, LOC100182565, LOC100182574, LOC100182577, LOC100182590, LOC100182593, LOC100182625, LOC100182659, LOC100182713, LOC100182718, LOC100182728, LOC100182732, LOC100182764, LOC100182772, myh6, LOC100182782, LOC100182794, LOC100182806, LOC100182808, LOC100182865, LOC100182886, LOC100182887, LOC100182890, LOC100182896, LOC100182898, LOC100182907, LOC100182938, LOC100182944, dsba, LOC100183002, LOC100183021, LOC100183057, LOC100183070, LOC100183095, LOC100183099, LOC100183115, LOC100183116, LOC100183129, LOC100183131, LOC100183142, LOC100183162, LOC100183173, LOC100183182, LOC100183222, LOC100183225, LOC100183234, LOC100183237, LOC100183248, LOC100183262, LOC100183267, LOC100183277, LOC100183297, LOC100183301, LOC100183316, LOC100183327, LOC100183357, LOC100183359, LOC100183399, LOC100183406, LOC100183413, LOC100183456, LOC100183457, LOC100183458, LOC100183462, LOC100183480, LOC100183485, LOC100183500, LOC100183501, LOC100183505, LOC100183514, LOC100183546, LOC100183551, LOC100183560, LOC100183576, LOC100183606, LOC100183622, LOC100183635, LOC100183638, LOC100183647, LOC100183671, LOC100183672, LOC100183688, LOC100183715, LOC100183725, LOC100183735, LOC100183757, LOC100183777, LOC100183784, LOC100183796, LOC100183801, LOC100183834, LOC100183882, LOC100183895, LOC100183938, LOC100183943, LOC100183950, LOC100183987, LOC100183989, LOC100184077, LOC100184101, LOC100184112, LOC100184127, LOC100184131, LOC100184136, LOC100184156, LOC100184159, LOC100184182, LOC100184190, LOC100184192, LOC100184215, LOC100184229, LOC100184243, LOC100184245, LOC100184252, LOC100184254, LOC100184289, LOC100184306, LOC100184309, LOC100184318, LOC100184354, LOC100184359, LOC100184370, LOC100184385, LOC100184417, lrp4, LOC100184465, LOC100184485, LOC100184505, LOC100184529, LOC100184555, LOC100184560, LOC100184566, LOC100184567, LOC100184626, LOC100184634, LOC100184644, LOC100184646, LOC100184670, LOC100184680, LOC100184688, LOC100184689, LOC100184704, LOC100184713, LOC100184728, LOC100184734, LOC100184752, LOC100184765, LOC100184769, LOC100184771, LOC100184792, LOC100184803, LOC100184804, LOC100184812, LOC100184822, LOC100184840, LOC100184862, LOC100184868, LOC100184873, LOC100184880, LOC100184890, LOC100184919, LOC100184933, LOC100184954, LOC100184964, LOC100184975, LOC100184979, LOC100185025, LOC100185054, LOC100185089, LOC100185098, LOC100185101, LOC100185123, LOC100185126, LOC100185144, LOC100185156, LOC100185169, LOC100185184, LOC100185186, LOC100185190, LOC100185209, LOC100185231, LOC100185234, LOC100185268, LOC100185291, LOC100185296, LOC100185300, LOC100185324, LOC100185340, LOC100185354, LOC100185366, LOC100185367, LOC100185371, LOC100185384, LOC100185391, LOC100185398, LOC100185410, LOC100185454, LOC100185462, LOC100185470, LOC100185478, LOC100185486, LOC100185496, LOC100185508, LOC100185510, LOC100185521, LOC100185530, LOC100185563, LOC100185575, LOC100185580, LOC100185587, LOC100185600, LOC100185602, LOC100185603, LOC100185608, LOC100185615, LOC100185642, LOC100185650, LOC100185655, LOC100185667, LOC100185675, LOC100185693, LOC100185700, LOC100185720, LOC100185739, LOC100185740, LOC100185747, LOC100185757, LOC100185771, LOC100185785, LOC100185792, LOC100185806, LOC100185823, LOC100185826, LOC100185878, LOC100185894, LOC100185908, LOC100185943, LOC100185947, LOC100185952, LOC100185976, LOC100185987, LOC100185989, LOC100185990, LOC100186025, LOC100186072, LOC100186096, LOC100186118, LOC100186120, LOC100186146, LOC100186192, LOC100186225, LOC100186239, LOC100186268, LOC100186270, LOC100186281, LOC100186296, LOC100186297, LOC100186301, LOC100186319, LOC100186345, LOC100186377, LOC100186387, LOC100186389, LOC100186402, LOC100186436, LOC100186453, LOC100186493, LOC100186495, LOC100186497, LOC100186508, LOC100186509, LOC100186514, LOC100186526, LOC100186528, LOC100186542, LOC100186546, LOC100186554, LOC100186570, LOC100186598, LOC100186601, LOC100186602, LOC100186625, LOC100186669, LOC100186675, LOC100186676, LOC100186679, LOC100186686, LOC100186700, LOC100186724, LOC100186730, LOC100186731, LOC100186737, LOC100186751, LOC100186769, LOC100186774, LOC100186783, LOC100186804, LOC100186814, LOC100186852, LOC100186863, LOC100186903, LOC100186912, LOC100186931, LOC100186953, LOC100186962, LOC100186996, LOC100187006, LOC100187015, LOC100187016, LOC100187074, LOC100187088, LOC100187093, LOC100187094, LOC100187111, LOC100187137, LOC100187156, LOC100187164, LOC100187177, LOC100187178, LOC100187194, LOC100187206, LOC100187236, LOC100187241, LOC100187244, LOC100187257, LOC100187260, LOC100187262, LOC100187294, LOC100187308, LOC100187347, LOC100187373, LOC100187376, LOC100187388, LOC100187401, LOC100187410, LOC100187444, LOC100187445, LOC100187475, LOC100187488, LOC100187491, LOC100187507, LOC100187518, LOC100187539, LOC100187544, LOC101241921, LOC101242103, LOC101242592, LOC101242627, LOC101242673, LOC101242849, LOC101242905, LOC101243353, LOC101243473, LOC104265373, LOC104265430, LOC104265487, LOC104265873, LOC104266782, tbx15/18/22, ck2b, dead1a, pax1/9, erm, not1, not3, not4, not5, leprecan, not6, not7, meta3, meta4, hh2, pf16, fgf8/17/18, en, nr1, otx2, hoxa2, titf1, msxb, hox3, dll-b, rps13, c3-1, pitx, rhou, soxB2, ets, hox10, cifrz, asak, meta1, ciatpsyna, LOC445767, elk, LOC445772, fgf4/5/6, su(h), dsh, acl, ncam, macho1, isl, rgc, b4galt, meta2, cibeta-catenin, hox4, cirgg1, LOC448996, per-like, LOC494392, LOC494394, dll-c, psl3, fcol1, rel1, ci-zf(c2h2)-87, ci-zf(phd)-21, ci-zf(c3h/u1like)-1, dynll6, zf(c2h2)-36, zf(tim10/ddp)-1, LOC778534, LOC778542, atf3, cagf9, cbf, coe, cbfb, LOC778577, dusp8.16, e(spl)/hairy-b, elf, erk5, erm/er81, ese, fhl1/2/3, foxi-b, foxj2, foxn2/3, foxq, LOC778622, ftzf, gabpalpha, groucho1, groucho2, gsc, hex, hif, hnf4, hox12, ikk-epsilon, LOC778651, irf-like-7, irx-a, irx-b, LOC778664, LOC778666, LOC778670, mapkk7, LOC778675, mesp, mta, mitf, mox, myc, nemo-like, nf-e2, nf-il2, nf-x-like, LOC778696, nkx-c, nr-like, numb, LOC778707, LOC778710, LOC778713, LOC778714, LOC778718, LOC778720, LOC778723, LOC778726, LOC778736, pur-alpha/beta/gamma, raf1, rar, rfx1/2/3, rhysin2/deltex3-b, sfrp3/4-b, LOC778753, LOC778757, srf, stat-b, LOC778789, xbpa, LOC778828, zf(u1like)-4, zf(c3h)-9, zf(c2h2)-101, meis, LOC778909, LOC778910, brachyury, LOC778912, dusp1.2.4.5, e12/e47, ephrina-b, ets/pointed1, hmg2-like, LOC778921, irf-like-5, prox-b, rhysin2/deltex3-c, smad6/7, socs7, swi/snf, tgfbr-ib, LOC778938, zf(c2h2)-34, LOC778954, egfr1, ap-2-like2, bmp3, foxa-a, LOC778969, hnf6, neurogenin, nodal, LOC778981, sfrp2, six45, LOC778994, otp, cagf9, coe, cbfb, LOC780715, LOC780718, gla3, ggcx, vcrl1
原始数据
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文献解读
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