phnD - phosphonate ABC transporter periplasmic binding protein-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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948624 phnD

基因描述

Type	Description
Definition	phosphonate ABC transporter periplasmic binding protein

研究结论

Date	Results	Publications
2012-01-21 11:43:00	structural analysis of Escherichia coli phosphonate binding protein PhnD and rationally optimized phosphonate biosensors	22019591

名称对应

Type	IDs
Synonymous	ECK4098, phn, psiD
Gene	UniProtKB-ID: PHND_ECOLI UniprotKB: P16682 UniParc: UPI0000131993 EMBL: U00096, J05260, D90227, AP009048, U14003 EnsemblGenome: BAE78107, b4105 KO: eco:b4105, ecj:JW4066
Nucleutide sequences	EMBL-CDS: AAC77066.1, AAA97004.1, AAA24340.1, BAA14263.1, BAE78107.1 EnsemblGenome_TRS: BAE78107, AAC77066
Protein sequencees	EnsemblGenome_PRO: BAE78107, AAC77066 RefSeq: NP_418529.1
Others	UniRef100: UniRef100_P16682 UniRef90: UniRef90_P16682 UniRef50: UniRef50_P16682

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mRNA

Protein

UniprotKB

Description

Refseq

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Location

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Pubmed编号	文献信息	发表日期	相关基因
22019591	Structure of the Escherichia coli phosphonate binding protein PhnD and rationally optimized phosphonate biosensors. J. Mol. Biol. Ismael Alicea , Jonathan S Marvin , Aleksandr E Miklos , Andrew D Ellington , Loren L Looger , Eric R Schreiter	2011-12-02	phnD
16751609	Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates. Protein Sci. Shahir S Rizk , Matthew J Cuneo , Homme W Hellinga	2006-07-01	phnC, phnD, phnE
16738553	Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. Koji Hayashi , Naoki Morooka , Yoshihiro Yamamoto , Katsutoshi Fujita , Katsumi Isono , Sunju Choi , Eiichi Ohtsubo , Tomoya Baba , Barry L Wanner , Hirotada Mori , Takashi Horiuchi	2006-01-01	pmrR, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeB, yohO, arnE, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, wecF, yigE, blr, yggP, cpxP, hdfR, thiS, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, yhaM, tdcG, ytfR, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yneM, ykfM, ylcI, yciY, yncL, ylcH, ynhF, yciZ, ydgU, ypfM, ymgI, ymgJ, dinQ
16381841	TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Nucleic Acids Res. Milton H Saier , Can V Tran , Ravi D Barabote	2006-01-01	ygaY, ecnB, cysW, hokC, nirC, dnaK, nhaA, caiT, yaaU, kefF, kefC, thiP, thiQ, satP, setA, ydfJ, bcr, uidC, secA, nhaB, fhuA, glnH, caiC, metQ, metI, metN, cyoD, phoE, yagG, yahN, codB, mhpT, dcuC, pal, lptD, tauC, tauB, tauA, yajR, cyoE, betT, cyoA, amtB, ftsK, acrB, acrA, fsr, mscK, nuoN, fetB, macB, wbbH, cusF, cusB, cusA, fepA, pheP, fepC, fepG, cstA, fepD, tatE, mrdB, fhuC, gltL, ynfF, nagE, tolR, chbB, zitB, mngA, modB, modC, modA, yajC, ybhL, lsrB, exbB, potE, tolB, glnQ, gltJ, mdfA, gsiA, gsiB, gsiC, gsiD, acrD, ybjJ, potH, potG, potF, potI, artP, aqpZ, dmsC, cydC, dmsB, dmsA
16397293	Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner	2006-01-01	pmrR, yfaS, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeF, yoeB, yohO, arnE, ypdJ, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, yifN, wecF, yigE, blr, yggP, cpxP, ygaY, hdfR, thiS, yedN, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, glvC, yhaM, tdcG, ytfR, yehH, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, gapC, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, yedS, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yaiX, yoeA, yneM
15342581	Reversible phase variation in the phnE gene, which is required for phosphonate metabolism in Escherichia coli K-12. J. Bacteriol. Samina Iqbal , George Parker , Helen Davidson , Elham Moslehi-Rahmani , Robert L Robson	2004-09-01	-
11160101	Genetic footprinting in bacteria. J. Bacteriol. R S Hare , S S Walker , T E Dorman , J R Greene , L M Guzman , T J Kenney , M C Sulavik , K Baradaran , C Houseweart , H Yu , Z Foldes , A Motzer , M Walbridge , G H Shimer , K J Shaw	2001-03-01	leuB, zapD, leuC, yacG, leuD, leuA, rpsJ, rplC, rplD, rrsB, murI, murB, malE, phnD, phnE, guaC, coaE, secF, secD
9647836	phnE and glpT genes enhance utilization of organophosphates in Escherichia coli K-12. Appl. Environ. Microbiol. I Elashvili , J J Defrank , V C Culotta	1998-07-01	glpT, phnC, phnD, phnE
9650256	Phosphate-independent expression of the carbon-phosphorus lyase activity of Escherichia coli. Appl. Microbiol. Biotechnol. G M Yakovleva , S K Kim , B L Wanner	1998-05-01	-
9278503	The complete genome sequence of Escherichia coli K-12. Science F R Blattner , G Plunkett , C A Bloch , N T Perna , V Burland , M Riley , J Collado-Vides , J D Glasner , C K Rode , G F Mayhew , J Gregor , N W Davis , H A Kirkpatrick , M A Goeden , D J Rose , B Mau , Y Shao	1997-09-05	-

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