| Type | Description |
|---|---|
| Definition | phosphomethylpyrimidine synthase |
| Date | Results | Publications |
|---|---|---|
| 2020-03-21 12:09:00 | we show that a hairpin structure in the Escherichia coli thiamin pyrophosphate (TPP) thiC riboswitch is involved in transcriptional pausing and ligand sensitivity. Using in vitro transcription kinetic experiments, we show that all three major transcriptional pauses in the thiC riboswitch are affected by NusA, a transcriptional factor known to stimulate hairpin-stabilized pauses | 31081713 |
| 2018-12-22 11:21:00 | The ThiC riboswitch controls transcription and translation.The thiC riboswitch directly controls translation initiation. | 28071751 |
| Type | IDs |
|---|---|
| Synonymous | ECK3986 |
| Gene |
UniProtKB-ID:
THIC_ECOLI
UniprotKB:
P30136
UniParc:
UPI0000136D9E
EMBL:
M88701,
U00096,
AP009048,
U00006
EnsemblGenome:
BAE77325,
b3994
KO:
eco:b3994,
ecj:JW3958
|
| Nucleutide sequences |
EMBL-CDS:
AAC76968.1,
BAE77325.1,
AAC43092.1,
AAB95616.1
EnsemblGenome_TRS:
AAC76968,
BAE77325
|
| Protein sequencees |
EnsemblGenome_PRO:
BAE77325,
AAC76968
RefSeq:
NP_418422.1
|
| Others |
UniRef100:
UniRef100_B7M7Q3
UniRef90:
UniRef90_Q32AG7
UniRef50:
UniRef50_O82392
|
| {{proteinIndex+1}} | mRNA | Protein | UniprotKB | Description | ||||
|---|---|---|---|---|---|---|---|---|
| Refseq |
{{protein.nucleotideVersion}}
Ensembl: {{protein.nucleotideEnsembl}} |
{{protein.proteinVersion}}
Ensembl: {{protein.proteinEnsembl}} |
{{uniprot}} , |
Definition: {{{protein.definition}}}Transcript Veriant:{{protein.transcriptVeriant}} Status: {{protein.status}} |
||||
| Location | {{protein.contigId}} ( {{protein.positionStart}}..{{protein.positionEnd}} , {{protein.orientation}} ) | |||||||
| Conserved domain | Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
{{conservedDomain.comments == '' || conservedDomain.comments == null ? "-" : conservedDomain.comments }} |
Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
{{conservedDomain.comments == '' || conservedDomain.comments == null ? "-" : conservedDomain.comments }} |
||||
暂无数据
| Pubmed编号 | 文献信息 | 发表日期 | 相关基因 |
|---|---|---|---|
| 31081713 |
Role of a hairpin-stabilized pause in the Escherichia coli thiC riboswitch function. RNA Biol Adrien Chauvier , Jean-François Nadon , Jonathan P Grondin , Anne-Marie Lamontagne , Daniel A Lafontaine |
2019-08-01 | - |
| 28071751 |
Nat Commun Adrien Chauvier , Frédéric Picard-Jean , Jean-Christophe Berger-Dancause , Laurène Bastet , Mohammad Reza Naghdi , Audrey Dubé , Pierre Turcotte , Jonathan Perreault , Daniel A Lafontaine |
2017-01-10 | - |
| 21873635 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas |
2011-09-01 | - |
| 19309314 |
Biochem. J. Guoqiang Tan , Jianxin Lu , Jacob P Bitoun , Hao Huang , Huangen Ding |
2009-06-15 |
acnB,
iscA,
nth,
ilvD,
thiC,
sufA
|
| 18686975 |
Biochemistry N Cecilia Martinez-Gomez , Diana M Downs |
2008-09-02 |
thiC
|
| 18304323 |
Protein abundance profiling of the Escherichia coli cytosol. BMC Genomics Yasushi Ishihama , Thorsten Schmidt , Juri Rappsilber , Matthias Mann , F Ulrich Hartl , Michael J Kerner , Dmitrij Frishman |
2008-01-01 | - |
| 17355861 |
The THI-box riboswitch, or how RNA binds thiamin pyrophosphate. Structure Juan Miranda-RÃos |
2007-03-01 |
thiM,
thiB,
thiC
|
| 16820464 |
Appl. Environ. Microbiol. Martin Köstner , Britta Schmidt , Ralph Bertram , Wolfgang Hillen |
2006-07-01 |
yhdP,
nirC,
carB,
leuB,
mraZ,
panB,
argP,
panC,
cvpA,
leuC,
entF,
serA,
gltA,
bioB,
bioA,
sfmH,
trpC,
serC,
pyrD,
hflD,
trpB,
cysB,
thrA,
trpE,
ydeO,
rclA,
lhr,
entB,
trpA,
metC,
hisB,
fruK,
proA,
menD,
pdxB,
truA,
cysP,
purC,
bamB,
tyrA,
pyrF,
cysD,
cysJ,
glcA,
leuA,
argG,
prmA,
lptC,
rplM,
argD,
cysG,
aroB,
cspA,
mtlA,
waaG,
yidL,
ilvD,
ilvY,
ilvC,
ilvA,
metE,
metB,
argC,
argE,
ppc,
thiC,
purH,
metA,
xylE,
pgi,
cysQ,
yjhF
|
| 16397293 |
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner |
2006-01-01 |
pmrR,
yfaS,
torI,
yaeP,
ykfH,
ykgO,
ylcG,
rzoD,
ybdZ,
cydX,
gnsA,
insA,
ymgF,
ymiA,
yciX,
rzoR,
ynfO,
yniD,
yobH,
yoeF,
yoeB,
yohO,
arnE,
ypdJ,
ypeB,
ypfN,
ypjJ,
arfA,
yheV,
ysaB,
sgcB,
yjhX,
ytjA,
yibT,
yicS,
yidD,
yifL,
ghoT,
yjjZ,
mntS,
iroK,
yifN,
wecF,
yigE,
blr,
yggP,
cpxP,
ygaY,
hdfR,
thiS,
yedN,
greB,
rtcA,
smf,
ygcU,
ypjK,
hokE,
sslE,
glcF,
glcE,
glvC,
yhaM,
tdcG,
ytfR,
yehH,
hokB,
ldrD,
hokA,
ldrA,
ldrB,
ecnA,
ecnB,
gapC,
yfjD,
yhdP,
yjjV,
cysW,
hokC,
ghxQ,
tatD,
yjdP,
cutC,
nirC,
frlC,
aroK,
gntU,
yedS,
dgoD,
dgoA,
dgoR,
yigL,
ldrC,
ylbE,
ydbJ,
yeiW,
yehK,
yaiX,
yoeA,
yneM
|
| 16738553 |
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. Koji Hayashi , Naoki Morooka , Yoshihiro Yamamoto , Katsutoshi Fujita , Katsumi Isono , Sunju Choi , Eiichi Ohtsubo , Tomoya Baba , Barry L Wanner , Hirotada Mori , Takashi Horiuchi |
2006-01-01 |
pmrR,
torI,
yaeP,
ykfH,
ykgO,
ylcG,
rzoD,
ybdZ,
cydX,
gnsA,
insA,
ymgF,
ymiA,
yciX,
rzoR,
ynfO,
yniD,
yobH,
yoeB,
yohO,
arnE,
ypeB,
ypfN,
ypjJ,
arfA,
yheV,
ysaB,
sgcB,
yjhX,
ytjA,
yibT,
yicS,
yidD,
yifL,
ghoT,
yjjZ,
mntS,
iroK,
wecF,
yigE,
blr,
yggP,
cpxP,
hdfR,
thiS,
greB,
rtcA,
smf,
ygcU,
ypjK,
hokE,
sslE,
glcF,
glcE,
yhaM,
tdcG,
ytfR,
hokB,
ldrD,
hokA,
ldrA,
ldrB,
ecnA,
ecnB,
yfjD,
yhdP,
yjjV,
cysW,
hokC,
ghxQ,
tatD,
yjdP,
cutC,
nirC,
frlC,
aroK,
gntU,
dgoD,
dgoA,
dgoR,
yigL,
ldrC,
ylbE,
ydbJ,
yeiW,
yehK,
yneM,
ykfM,
ylcI,
yciY,
yncL,
ylcH,
ynhF,
yciZ,
ydgU,
ypfM,
ymgI,
ymgJ,
dinQ
|
| 排名 | 科研单位 | 文献 |
|---|---|---|
| {{affIndex+1}} |
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| 排名 | 研究人员 | 文献 |
|---|---|---|
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