rhaR - DNA-binding transcriptional activator RhaR-BMKCloudï½ç¾è¿å®¢äº

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948396 rhaR

基因描述

Type	Description
Definition	DNA-binding transcriptional activator RhaR

研究结论

Date	Results	Publications
2010-01-21 00:00:00	CRP activates transcription from rhaSR as it would at simple class I promoters, albeit from a relatively distant position	16166533
2010-01-21 00:00:00	Results indicate that RhaS negative autoregulation involves RhaS competition with RhaR for binding to the RhaR binding site at rhaSR.	19854903

名称对应

Type	IDs
Synonymous	ECK3899, rhaC1
Gene	UniProtKB-ID: RHAR_ECOLI UniprotKB: P09378 UniParc: UPI00015888AD EMBL: L19201, U00096, X06058, AP009048, X60699, M85158 EnsemblGenome: b3906, BAE77403 KO: ecj:JW3877, eco:b3906
Nucleutide sequences	EMBL-CDS: CAA43110.1, CAA29453.1, AAB03039.1, BAE77403.1, AAA24530.1, AAC76888.2 EnsemblGenome_TRS: AAC76888, BAE77403
Protein sequencees	EnsemblGenome_PRO: AAC76888, BAE77403 RefSeq: NP_418342.2
Others	UniRef100: UniRef100_C5A074 UniRef90: UniRef90_Q8X7B3 UniRef50: UniRef50_Q8X7B3

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mRNA

Protein

UniprotKB

Description

Refseq

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Pubmed编号	文献信息	发表日期	相关基因
24561554	The binary protein-protein interaction landscape of Escherichia coli. Nat. Biotechnol. Seesandra V Rajagopala , Patricia Sikorski , Ashwani Kumar , Roberto Mosca , James Vlasblom , Roland Arnold , Jonathan Franca-Koh , Suman B Pakala , Sadhna Phanse , Arnaud Ceol , Roman HÃ¤user , Gabriella Siszler , Stefan Wuchty , Andrew Emili , Mohan Babu , Patrick Aloy , Rembert Pieper , Peter Uetz	2014-03-01	-
19854903	The AraC/XylS family activator RhaS negatively autoregulates rhaSR expression by preventing cyclic AMP receptor protein activation. J. Bacteriol. Jason R Wickstrum , Jeff M Skredenske , Vinitha Balasubramaniam , Kyle Jones , Susan M Egan	2010-01-01	crp, rhaR, rhaS
18366439	Differences in the mechanism of the allosteric l-rhamnose responses of the AraC/XylS family transcription activators RhaS and RhaR. Mol Microbiol Ana Kolin , Vinitha Balasubramaniam , Jeff M Skredenske , Jason R Wickstrum , Susan M Egan	2008-04-01	-
17513476	Transcription activation by the DNA-binding domain of the AraC family protein RhaS in the absence of its effector-binding domain. J. Bacteriol. Jason R Wickstrum , Jeff M Skredenske , Ana Kolin , Ding J Jin , Jianwen Fang , Susan M Egan	2007-07-01	crp, rhaR, rhaS, rhaT, rhaB
16568824	Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system. BioTechniques Matthew J Giacalone , Angela M Gentile , Brian T Lovitt , Neil L Berkley , Carl W Gunderson , Mark W Surber	2006-03-01	-
16397293	Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner	2006-01-01	pmrR, yfaS, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeF, yoeB, yohO, arnE, ypdJ, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, yifN, wecF, yigE, blr, yggP, cpxP, ygaY, hdfR, thiS, yedN, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, glvC, yhaM, tdcG, ytfR, yehH, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, gapC, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, yedS, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yaiX, yoeA, yneM
16738553	Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. Koji Hayashi , Naoki Morooka , Yoshihiro Yamamoto , Katsutoshi Fujita , Katsumi Isono , Sunju Choi , Eiichi Ohtsubo , Tomoya Baba , Barry L Wanner , Hirotada Mori , Takashi Horiuchi	2006-01-01	pmrR, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeB, yohO, arnE, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, wecF, yigE, blr, yggP, cpxP, hdfR, thiS, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, yhaM, tdcG, ytfR, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yneM, ykfM, ylcI, yciY, yncL, ylcH, ynhF, yciZ, ydgU, ypfM, ymgI, ymgJ, dinQ
16166533	Cyclic AMP receptor protein and RhaR synergistically activate transcription from the L-rhamnose-responsive rhaSR promoter in Escherichia coli. J. Bacteriol. Jason R Wickstrum , Thomas J Santangelo , Susan M Egan	2005-10-01	crp, rhaR, rhaS
15342598	Amino acid contacts between sigma 70 domain 4 and the transcription activators RhaS and RhaR. J. Bacteriol. Jason R Wickstrum , Susan M Egan	2004-09-01	rpoD, rhaR, rhaS, rhaB, rhaA, rhaD
11073923	Interdependence of activation at rhaSR by cyclic AMP receptor protein, the RNA polymerase alpha subunit C-terminal domain, and rhaR. J Bacteriol C C Holcroft , S M Egan	2000-12-01	-

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