dusB - tRNA-dihydrouridine synthase B-BMKCloudï½ç¾è¿å®¢äº

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947707 dusB

基因描述

Type	Description
Definition	tRNA-dihydrouridine synthase B

研究结论

Date	Results	Publications
2019-07-06 10:30:00	The complete substrate specificities of the three Escherichia coli Dus tRNA-dihydrouridine synthases have been described, and the crystal structure of DusB has been solved.	29294097

名称对应

Type	IDs
Synonymous	ECK3247, yhdG
Gene	UniProtKB-ID: DUSB_ECOLI UniprotKB: P0ABT5 UniParc: UPI000013B1EF EMBL: AP009048, U18997, U00096, S67010, M95784, X62399, J03816, J03245 EnsemblGenome: b3260, BAE77301 KO: eco:b3260, ecj:JW3228
Nucleutide sequences	EMBL-CDS: AAA23782.1, AAB28770.2, AAA58064.1, AAA83855.1, CAA44270.1, BAE77301.1, AAC76292.1 EnsemblGenome_TRS: BAE77301, AAC76292
Protein sequencees	EnsemblGenome_PRO: BAE77301, AAC76292 RefSeq: NP_417726.1
Others	UniRef100: UniRef100_P0ABT7 UniRef90: UniRef90_P0ABT7 UniRef50: UniRef50_Q8ZAX7

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mRNA

Protein

UniprotKB

Description

Refseq

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Pubmed编号	文献信息	发表日期	相关基因
29294097	Unveiling structural and functional divergences of bacterial tRNA dihydrouridine synthases: perspectives on the evolution scenario. Nucleic Acids Res. Charles Bou-Nader , Hugo MontÃ©mont , Vincent GuÃ©rineau , Olivier Jean-Jean , Damien BrÃ©geon , Djemel Hamdane	2018-02-16	-
27718375	Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Mutat. Res. Neil J Sargentini , Nicholas P Gularte , Deborah A Hudman	2016-10-03	-
16849790	Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Microbiology (Reading, Engl.) Lauren M Junker , Joseph E Peters , Anthony G Hay	2006-08-01	ygaY, glvC, ytfR, nirC, aroK, yjhR, sspA, folA, setA, secM, lpxB, glnD, yafJ, insH1, ykfJ, insH1, panC, yahJ, renD, yajQ, priC, leuC, betT, dps, fsr, ybbJ, ydgI, fau, quuD, fepG, ybdH, cmtA, iscR, ddlA, ybgD, chbB, yagN, ybhJ, ybiH, ybiT, ybiY, nanR, ybjO, ycaN, ycaP, ycbU, hspQ, pgaA, cyoB, ycdZ, mdtG, yceH, ptsG, ycjM, holB, lolE, cspD, pspF, icd, btuR, yagL, rnb, insH1, hybO, recE, feaB, insH1, ydcU, ddpD, ddpC, narV, narW, ydfG, ynfL, mmuM, insH1, rstA, ycgL, ydjG, cheW, araF, insH1, yeeP, insH1, wcaJ, yehE, yehC, yehA, fruA, osmF, glpT, menC, cynX, flk, uxuB, accD, mnmC, yfcR, emrY
16606699	Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res Mohammad Arifuzzaman , Maki Maeda , Aya Itoh , Kensaku Nishikata , Chiharu Takita , Rintaro Saito , Takeshi Ara , Kenji Nakahigashi , Hsuan-Cheng Huang , Aki Hirai , Kohei Tsuzuki , Seira Nakamura , Mohammad Altaf-Ul-Amin , Taku Oshima , Tomoya Baba , Natsuko Yamamoto , Tomoyo Kawamura , Tomoko Ioka-Nakamichi , Masanari Kitagawa , Masaru Tomita , Shigehiko Kanaya , Chieko Wada , Hirotada Mori	2006-05-01	-
16397293	Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner	2006-01-01	pmrR, yfaS, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeF, yoeB, yohO, arnE, ypdJ, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, yifN, wecF, yigE, blr, yggP, cpxP, ygaY, hdfR, thiS, yedN, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, glvC, yhaM, tdcG, ytfR, yehH, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, gapC, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, yedS, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yaiX, yoeA, yneM
16738553	Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. Koji Hayashi , Naoki Morooka , Yoshihiro Yamamoto , Katsutoshi Fujita , Katsumi Isono , Sunju Choi , Eiichi Ohtsubo , Tomoya Baba , Barry L Wanner , Hirotada Mori , Takashi Horiuchi	2006-01-01	pmrR, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeB, yohO, arnE, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, wecF, yigE, blr, yggP, cpxP, hdfR, thiS, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, yhaM, tdcG, ytfR, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yneM, ykfM, ylcI, yciY, yncL, ylcH, ynhF, yciZ, ydgU, ypfM, ymgI, ymgJ, dinQ
12627170	Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Nat. Biotechnol. Zhaohui S Qin , Lee Ann McCue , William Thompson , Linda Mayerhofer , Charles E Lawrence , Jun S Liu	2003-04-01	yjjV, cysW, yigL, dnaJ, rpsT, ftsZ, surA, lpxC, nhaB, pdhR, dksA, lpd, cdsA, gmhB, metN, dinB, pyrH, mhpT, cusR, dinI, cvpA, gpmA, cyoA, acrA, ompW, nuoN, ybeD, folD, purR, serA, iscR, nagB, fur, sucC, cydA, nadA, uvrB, ybhK, moaA, gcl, ybiJ, artP, aqpZ, infA, mlc, focA, ycaD, acrR, aspC, fabA, ycbZ, matP, aroG, ycdZ, rne, ptsG, mltD, dauA, prs, yqaB, adhE, rluB, trpE, malX, yccA, aroP, ppiD, idnK, pyrG, rsxA, plsX, pykF, pheS, aroH, fadD, manX, mntP, edd, yebG, ruvA, yebK, tyrP, dnaQ, sxy, nrdA, cdd, fabF, fruB, glpA, acnA, nuoA, mutM, ndh, fecI, ptsH, mntH, gltX, rpmB, purM
12368244	Factors influencing the identification of transcription factor binding sites by cross-species comparison. Genome Res. Lee Ann McCue , William Thompson , C Steven Carmack , Charles E Lawrence	2002-10-01	yjjV, cysW, yigL, dnaJ, rpsT, ftsZ, surA, lpxC, nhaB, pdhR, dksA, lpd, cdsA, gmhB, metN, dinB, pyrH, mhpT, cusR, dinI, cvpA, gpmA, cyoA, acrA, ompW, nuoN, ybeD, folD, purR, serA, iscR, nagB, fur, sucC, cydA, nadA, uvrB, ybhK, moaA, gcl, ybiJ, artP, aqpZ, infA, mlc, focA, ycaD, acrR, aspC, fabA, ycbZ, matP, aroG, ycdZ, rne, ptsG, mltD, dauA, prs, yqaB, adhE, rluB, trpE, malX, yccA, aroP, ppiD, idnK, pyrG, rsxA, plsX, pykF, pheS, aroH, fadD, manX, mntP, edd, yebG, ruvA, yebK, tyrP, dnaQ, sxy, nrdA, cdd, fabF, fruB, glpA, acnA, nuoA, mutM, ndh, fecI, ptsH, mntH, gltX, rpmB, purM
11983710	Identification of the tRNA-dihydrouridine synthase family. J Biol Chem Anthony C Bishop , Jimin Xu , Reid C Johnson , Paul Schimmel , ValÃ©rie de CrÃ©cy-Lagard	2002-07-12	-
11917006	Comparative genomics and evolution of proteins involved in RNA metabolism. Nucleic Acids Res. Vivek Anantharaman , Eugene V Koonin , L Aravind	2002-04-01	-

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