ymdB - 2'-O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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946987 ymdB

基因描述

Type	Description
Definition	2'-O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity

研究结论

Date	Results	Publications
2015-11-14 11:50:00	Studied atomic-level features of YmdB-RNase III interaction.	25546632
2014-07-05 12:47:00	This is the first global profile of target genes modulated by YmdB-induced RNase III inhibition in Escherichia coli, and the data reveal a novel, hitherto unrecognized regulatory role for YmdB in biofilm modulation.	24267348

名称对应

Type	IDs
Synonymous	ECK1031
Gene	UniProtKB-ID: YMDB_ECOLI UniprotKB: P0A8D6 UniParc: UPI000013B991 EMBL: U00096, AP009048 EnsemblGenome: BAA35835, b1045 KO: ecj:JW1032, eco:b1045
Nucleutide sequences	EMBL-CDS: BAA35835.1, AAC74129.1 EnsemblGenome_TRS: BAA35835, AAC74129
Protein sequencees	EnsemblGenome_PRO: AAC74129, BAA35835 RefSeq: NP_415563.1
Others	UniRef100: UniRef100_P0A8D8 UniRef90: UniRef90_P0A8D8 UniRef50: UniRef50_P0A8D8

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mRNA

Protein

UniprotKB

Description

Refseq

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Pubmed编号	文献信息	发表日期	相关基因
28034758	YmdB-mediated down-regulation of sucA inhibits biofilm formation and induces apramycin susceptibility in Escherichia coli. Biochem. Biophys. Res. Commun. Moonjeong Kim , Minji Kim , Kwang-Sun Kim	2017-01-29	-
25546632	Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB. Proteins Samridhdi Paudyal , Mercedes Alfonso-Prieto , Vincenzo Carnevale , Shiv K Redhu , Michael L Klein , Allen W Nicholson	2015-03-01	rnc, ymdB
24267348	Escherichia coli YmdB regulates biofilm formation independently of its role as an RNase III modulator. BMC Microbiol. Taeyeon Kim , Juyeon Lee , Kwang-sun Kim	2013-01-01	ymdB
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
21257746	Identification of macrodomain proteins as novel O-acetyl-ADP-ribose deacetylases. J Biol Chem Dawei Chen , Melanie Vollmar , Marianna N Rossi , Claire Phillips , Rolf Kraehenbuehl , Dea Slade , Pawan V Mehrotra , Frank von Delft , Susan K Crosthwaite , Opher Gileadi , John M Denu , Ivan Ahel	2011-04-15	-
19141481	YmdB: a stress-responsive ribonuclease-binding regulator of E. coli RNase III activity. Genes Dev Kwang-sun Kim , Robert Manasherob , Stanley N Cohen	2008-12-15	-
16738553	Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. Koji Hayashi , Naoki Morooka , Yoshihiro Yamamoto , Katsutoshi Fujita , Katsumi Isono , Sunju Choi , Eiichi Ohtsubo , Tomoya Baba , Barry L Wanner , Hirotada Mori , Takashi Horiuchi	2006-01-01	pmrR, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeB, yohO, arnE, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, wecF, yigE, blr, yggP, cpxP, hdfR, thiS, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, yhaM, tdcG, ytfR, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yneM, ykfM, ylcI, yciY, yncL, ylcH, ynhF, yciZ, ydgU, ypfM, ymgI, ymgJ, dinQ
16397293	Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner	2006-01-01	pmrR, yfaS, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeF, yoeB, yohO, arnE, ypdJ, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, yifN, wecF, yigE, blr, yggP, cpxP, ygaY, hdfR, thiS, yedN, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, glvC, yhaM, tdcG, ytfR, yehH, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, gapC, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, yedS, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yaiX, yoeA, yneM
11574054	A functional update of the Escherichia coli K-12 genome. Genome Biol. M H Serres , S Gopal , L A Nahum , P Liang , T Gaasterland , M Riley	2001-01-01	-
9278503	The complete genome sequence of Escherichia coli K-12. Science F R Blattner , G Plunkett , C A Bloch , N T Perna , V Burland , M Riley , J Collado-Vides , J D Glasner , C K Rode , G F Mayhew , J Gregor , N W Davis , H A Kirkpatrick , M A Goeden , D J Rose , B Mau , Y Shao	1997-09-05	-

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