pgaB - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase and beta-1,6 glycoside hydrolase-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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945604 pgaB

基因描述

Type	Description
Definition	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase and beta-1,6 glycoside hydrolase

研究结论

Date	Results	Publications
2013-06-01 11:48:00	The crystal structure of the N-terminal domain of PgaB, which has deacetylase activity, is described and compared with models of other deacetylases.	23275162
2012-09-29 11:07:00	Crystals of the selenomethionine-incorporated PgaB exhibited the symmetry of space group P2(1)2(1)2(1) and diffracted to 2.1 A resolution	22750880

名称对应

Type	IDs
Synonymous	ECK1013, hmsF, ycdR
Gene	UniProtKB-ID: PGAB_ECOLI UniprotKB: P75906 UniParc: UPI000013A5EA EMBL: AP009048, U00096 EnsemblGenome: BAA35805, b1023 KO: eco:b1023, ecj:JW5142
Nucleutide sequences	EMBL-CDS: BAA35805.2, AAC74108.1 EnsemblGenome_TRS: AAC74108, BAA35805
Protein sequencees	EnsemblGenome_PRO: BAA35805, AAC74108 RefSeq: NP_415542.1
Others	UniRef100: UniRef100_P75906 UniRef90: UniRef90_P75906 UniRef50: UniRef50_P75906

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mRNA

Protein

UniprotKB

Description

Refseq

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全选

Pubmed编号	文献信息	发表日期	相关基因
29684093	PgaB orthologues contain a glycoside hydrolase domain that cleaves deacetylated poly-Î²(1,6)-N-acetylglucosamine and can disrupt bacterial biofilms. PLoS Pathog Dustin J Little , Roland Pfoh , FranÃ§ois Le Mauff , Natalie C Bamford , Christina Notte , Perrin Baker , Manita Guragain , Howard Robinson , Gerald B Pier , Mark Nitz , Rajendar Deora , Donald C Sheppard , P Lynne Howell	2018-04-01	-
26957546	Structural Basis for Translocation of a Biofilm-supporting Exopolysaccharide across the Bacterial Outer Membrane. J Biol Chem Yan Wang , Archana Andole Pannuri , Dongchun Ni , Haizhen Zhou , Xiou Cao , Xiaomei Lu , Tony Romeo , Yihua Huang	2016-05-06	-
23275162	The structure of the deacetylase domain of Escherichia coli PgaB, an enzyme required for biofilm formation: a circularly permuted member of the carbohydrate esterase 4 family. Acta Crystallogr. D Biol. Crystallogr. Takashi Nishiyama , Hiroki Noguchi , Hisashi Yoshida , Sam Yong Park , Jeremy R H Tame	2013-01-01	pgaB
22810235	The structure- and metal-dependent activity of Escherichia coli PgaB provides insight into the partial de-N-acetylation of poly-Î²-1,6-N-acetyl-D-glucosamine. J Biol Chem Dustin J Little , Joanna Poloczek , John C Whitney , Howard Robinson , Mark Nitz , P Lynne Howell	2012-09-07	-
22750880	Combining in situ proteolysis and mass spectrometry to crystallize Escherichia coli PgaB. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. Dustin J Little , John C Whitney , Howard Robinson , Patrick Yip , Mark Nitz , P Lynne Howell	2012-07-01	-
18445167	Effect of growth conditions on poly-N-acetylglucosamine expression and biofilm formation in Escherichia coli. FEMS Microbiol. Lett. Nuno Cerca , Kimberly K Jefferson	2008-06-01	nhaR, pgaA, pgaB, pgaC, csrA, pgaD
18359807	Roles of pgaABCD genes in synthesis, modification, and export of the Escherichia coli biofilm adhesin poly-beta-1,6-N-acetyl-D-glucosamine. J Bacteriol Yoshikane Itoh , John D Rice , Carlos Goller , Archana Pannuri , Jeannette Taylor , Jeffrey Meisner , Terry J Beveridge , James F Preston , Tony Romeo	2008-05-01	-
16997959	The cation-responsive protein NhaR of Escherichia coli activates pgaABCD transcription, required for production of the biofilm adhesin poly-beta-1,6-N-acetyl-D-glucosamine. J. Bacteriol. Carlos Goller , Xin Wang , Yoshikane Itoh , Tony Romeo	2006-12-01	nhaR, pgaA, pgaB, pgaC, pgaD
16923806	Comprehensive alanine-scanning mutagenesis of Escherichia coli CsrA defines two subdomains of critical functional importance. J Biol Chem Jeffrey Mercante , Kazushi Suzuki , Xiaodong Cheng , Paul Babitzke , Tony Romeo	2006-10-20	-
16397293	Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner	2006-01-01	pmrR, yfaS, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeF, yoeB, yohO, arnE, ypdJ, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, yifN, wecF, yigE, blr, yggP, cpxP, ygaY, hdfR, thiS, yedN, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, glvC, yhaM, tdcG, ytfR, yehH, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, gapC, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, yedS, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yaiX, yoeA, yneM

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