roxA - ribosomal protein-arginine oxygenase-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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945391 roxA

基因描述

Type	Description
Definition	ribosomal protein-arginine oxygenase

研究结论

Date	Results	Publications
2014-06-14 13:03:00	The crystal structure of YcfD at 2.7 A resolution reveals that YcfD is structurally similar to known JmjC proteins and possesses the characteristic double-stranded beta-helix fold or cupin domain.	24530688

名称对应

Type	IDs
Synonymous	ECK1114, ycfD
Gene	UniProtKB-ID: ROXA_ECOLI UniprotKB: P27431 UniParc: UPI000013A675 EMBL: U00096, D90393, AP009048 EnsemblGenome: b1128, BAA35950 KO: ecj:JW1114, eco:b1128
Nucleutide sequences	EMBL-CDS: AAC74212.2, BAA35950.1 EnsemblGenome_TRS: AAC74212, BAA35950
Protein sequencees	EnsemblGenome_PRO: BAA35950, AAC74212 RefSeq: NP_415646.4
Others	UniRef100: UniRef100_P27431 UniRef90: UniRef90_P27431 UniRef50: UniRef50_P27431

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mRNA

Protein

UniprotKB

Description

Refseq

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Location

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Pubmed编号	文献信息	发表日期	相关基因
24530688	Structure and functional analysis of YcfD, a novel 2-oxoglutarate/FeÂ²âº-dependent oxygenase involved in translational regulation in Escherichia coli. J. Mol. Biol. Laura M van Staalduinen , Stefanie K Novakowski , Zongchao Jia	2014-05-01	roxA
23103944	Oxygenase-catalyzed ribosome hydroxylation occurs in prokaryotes and humans. Nat. Chem. Biol. Wei Ge , Alexander Wolf , Tianshu Feng , Chia-Hua Ho , Rok Sekirnik , Adam Zayer , Nicolas Granatino , Matthew E Cockman , Christoph Loenarz , Nikita D Loik , Adam P Hardy , Timothy D W Claridge , Refaat B Hamed , Rasheduzzaman Chowdhury , Lingzhi Gong , Carol V Robinson , David C Trudgian , Miao Jiang , Mukram M Mackeen , James S Mccullagh , Yuliya Gordiyenko , Armin Thalhammer , Atsushi Yamamoto , Ming Yang , Phebee Liu-Yi , Zhihong Zhang , Marion Schmidt-Zachmann , Benedikt M Kessler , Peter J Ratcliffe , Gail M Preston , Mathew L Coleman , Christopher J Schofield	2012-12-01	-
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
16397293	Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Res. Monica Riley , Takashi Abe , Martha B Arnaud , Mary K B Berlyn , Frederick R Blattner , Roy R Chaudhuri , Jeremy D Glasner , Takashi Horiuchi , Ingrid M Keseler , Takehide Kosuge , Hirotada Mori , Nicole T Perna , Guy Plunkett , Kenneth E Rudd , Margrethe H Serres , Gavin H Thomas , Nicholas R Thomson , David Wishart , Barry L Wanner	2006-01-01	pmrR, yfaS, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeF, yoeB, yohO, arnE, ypdJ, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, yifN, wecF, yigE, blr, yggP, cpxP, ygaY, hdfR, thiS, yedN, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, glvC, yhaM, tdcG, ytfR, yehH, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, gapC, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, yedS, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yaiX, yoeA, yneM
16738553	Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Mol. Syst. Biol. Koji Hayashi , Naoki Morooka , Yoshihiro Yamamoto , Katsutoshi Fujita , Katsumi Isono , Sunju Choi , Eiichi Ohtsubo , Tomoya Baba , Barry L Wanner , Hirotada Mori , Takashi Horiuchi	2006-01-01	pmrR, torI, yaeP, ykfH, ykgO, ylcG, rzoD, ybdZ, cydX, gnsA, insA, ymgF, ymiA, yciX, rzoR, ynfO, yniD, yobH, yoeB, yohO, arnE, ypeB, ypfN, ypjJ, arfA, yheV, ysaB, sgcB, yjhX, ytjA, yibT, yicS, yidD, yifL, ghoT, yjjZ, mntS, iroK, wecF, yigE, blr, yggP, cpxP, hdfR, thiS, greB, rtcA, smf, ygcU, ypjK, hokE, sslE, glcF, glcE, yhaM, tdcG, ytfR, hokB, ldrD, hokA, ldrA, ldrB, ecnA, ecnB, yfjD, yhdP, yjjV, cysW, hokC, ghxQ, tatD, yjdP, cutC, nirC, frlC, aroK, gntU, dgoD, dgoA, dgoR, yigL, ldrC, ylbE, ydbJ, yeiW, yehK, yneM, ykfM, ylcI, yciY, yncL, ylcH, ynhF, yciZ, ydgU, ypfM, ymgI, ymgJ, dinQ
15121896	Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Nucleic Acids Res. Eugene Kolker , Kira S Makarova , Svetlana Shabalina , Alex F Picone , Samuel Purvine , Ted Holzman , Tim Cherny , David Armbruster , Robert S Munson , Grigory Kolesov , Dmitrij Frishman , Michael Y Galperin	2004-01-01	-
11574054	A functional update of the Escherichia coli K-12 genome. Genome Biol. M H Serres , S Gopal , L A Nahum , P Liang , T Gaasterland , M Riley	2001-01-01	-
9278503	The complete genome sequence of Escherichia coli K-12. Science F R Blattner , G Plunkett , C A Bloch , N T Perna , V Burland , M Riley , J Collado-Vides , J D Glasner , C K Rode , G F Mayhew , J Gregor , N W Davis , H A Kirkpatrick , M A Goeden , D J Rose , B Mau , Y Shao	1997-09-05	-
1729240	Molecular analysis of the Escherichia coli phoP-phoQ operon. J. Bacteriol. M Kasahara , A Nakata , H Shinagawa	1992-01-01	-

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