pdeB - 2'3' and 3'5' cyclic nucleotide monophosphates phosphodiesterase involved in biofilm formation-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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939441 pdeB

基因描述

Type	Description
Definition	2'3' and 3'5' cyclic nucleotide monophosphates phosphodiesterase involved in biofilm formation

研究结论

Date	Results	Publications
2017-12-09 14:04:00	Bacillus subtilis rapidly inhibits Bacillus megaterium growth by delivering the tRNase toxin WapA and the inhibition is YmdB-mediated.	28827522
2014-03-01 11:41:00	Authors find that YmdB is a phosphodiesterase with activity against 2',3'- and 3',5'-cyclic nucleotide monophosphates.	24163345
2011-12-10 10:51:00	T he ymdB mutant is unable to form biofilms.	21856853

名称对应

Type	IDs
Synonymous	BSU16970
Gene	UniProtKB-ID: YMDB_BACSU, A0A6M4JGJ4_BACSU UniprotKB: O31775, A0A6M4JGJ4 UniParc: UPI000195C5FA EMBL: AL009126, CP052842, CP053102 EnsemblGenome: BSU16970 KO: bsu:BSU16970
Nucleutide sequences	EMBL-CDS: CAB13570.2, QJP88203.1, QJR46144.1 Gene_ORFName: HIR78_09220, HIR77_09195 EnsemblGenome_TRS: CAB13570
Protein sequencees	EnsemblGenome_PRO: CAB13570 RefSeq: NP_389579.2
Others	UniRef100: UniRef100_O31775 UniRef90: UniRef90_O31775 UniRef50: UniRef50_O31775

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mRNA

Protein

UniprotKB

Description

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Pubmed编号	文献信息	发表日期	相关基因
29280348	Bacillus subtilis, the model Gram-positive bacterium: 20Â years of annotation refinement. Microb Biotechnol Rainer Borriss , Antoine Danchin , Colin R Harwood , Claudine MÃ©digue , Eduardo P C Rocha , Agnieszka Sekowska , David Vallenet	2018-01-01	-
28827522	Interspecies nutrient extraction and toxin delivery between bacteria. Nat Commun Ofer Stempler , Amit K Baidya , Saurabh Bhattacharya , Ganesh Babu Malli Mohan , Elhanan Tzipilevich , Lior Sinai , Gideon Mamou , Sigal Ben-Yehuda	2017-08-22	-
24163345	The YmdB phosphodiesterase is a global regulator of late adaptive responses in Bacillus subtilis. J. Bacteriol. Christine Diethmaier , Joseph A Newman , Akos T KovÃ¡cs , Volkhard Kaever , Christina Herzberg , Cecilia Rodrigues , Mirjam Boonstra , Oscar P Kuipers , Richard J Lewis , JÃ¶rg StÃ¼lke	2014-01-01	-
23429746	An updated metabolic view of the Bacillus subtilis 168 genome. Microbiology (Reading, Engl.) Eugeni Belda , Agnieszka Sekowska , FranÃ§ois Le FÃ¨vre , Anne Morgat , Damien Mornico , Christos Ouzounis , David Vallenet , Claudine MÃ©digue , Antoine Danchin	2013-04-01	-
21856853	A novel factor controlling bistability in Bacillus subtilis: the YmdB protein affects flagellin expression and biofilm formation. J. Bacteriol. Christine Diethmaier , Nico Pietack , Katrin Gunka , Christoph Wrede , Martin Lehnik-Habrink , Christina Herzberg , Sebastian HÃ¼bner , JÃ¶rg StÃ¼lke	2011-11-01	ymdB
19383706	From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Microbiology (Reading) ValÃ©rie Barbe , StÃ©phane Cruveiller , Frank Kunst , Patricia Lenoble , Guillaume Meurice , Agnieszka Sekowska , David Vallenet , Tingzhang Wang , Ivan Moszer , Claudine MÃ©digue , Antoine Danchin	2009-06-01	-
9384377	The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature F Kunst , N Ogasawara , I Moszer , A M Albertini , G Alloni , V Azevedo , M G Bertero , P BessiÃ¨res , A Bolotin , S Borchert , R Borriss , L Boursier , A Brans , M Braun , S C Brignell , S Bron , S Brouillet , C V Bruschi , B Caldwell , V Capuano , N M Carter , S K Choi , J J Cordani , I F Connerton , N J Cummings , R A Daniel , F Denziot , K M Devine , A DÃ¼sterhÃ¶ft , S D Ehrlich , P T Emmerson , K D Entian , J Errington , C Fabret , E Ferrari , D Foulger , C Fritz , M Fujita , Y Fujita , S Fuma , A Galizzi , N Galleron , S Y Ghim , P Glaser , A Goffeau , E J Golightly , G Grandi , G Guiseppi , B J Guy , K Haga , J Haiech , C R Harwood , A HÃ¨naut , H Hilbert , S Holsappel , S Hosono , M F Hullo , M Itaya , L Jones , B Joris , D Karamata , Y Kasahara , M Klaerr-Blanchard , C Klein , Y Kobayashi , P Koetter , G Koningstein , S Krogh , M Kumano , K Kurita , A Lapidus , S Lardinois , J Lauber , V Lazarevic , S M Lee , A Levine , H Liu , S Masuda , C MauÃ«l , C MÃ©digue , N Medina , R P Mellado , M Mizuno , D Moestl , S Nakai , M Noback , D Noone , M O'Reilly , K Ogawa , A Ogiwara , B Oudega , S H Park , V Parro , T M Pohl , D Portelle , S Porwollik , A M Prescott , E Presecan , P Pujic , B Purnelle , G Rapoport , M Rey , S Reynolds , M Rieger , C Rivolta , E Rocha , B Roche , M Rose , Y Sadaie , T Sato , E Scanlan , S Schleich , R Schroeter , F Scoffone , J Sekiguchi , A Sekowska , S J Seror , P Serror , B S Shin , B Soldo , A Sorokin , E Tacconi , T Takagi , H Takahashi , K Takemaru , M Takeuchi , A Tamakoshi , T Tanaka , P Terpstra , A Togoni , V Tosato , S Uchiyama , M Vandebol , F Vannier , A Vassarotti , A Viari , R Wambutt , H Wedler , T Weitzenegger , P Winters , A Wipat , H Yamamoto , K Yamane , K Yasumoto , K Yata , K Yoshida , H F Yoshikawa , E Zumstein , H Yoshikawa , A Danchin	1997-11-20	yozQ, sspN, antE, mrpE, sboX, spsL, kipA, ygaF, sspG, ruvB, sda, sspK, yqzJ, yneP, ygzB, gerT, yojG, dgcW, sspL, ymzD, yezE, sspJ, yrzL, yizA, sspM, ydzU, ykzN, yqzK, yczK, yyzN, yoyI, youA, yezF, skfC, yjzI, rsoA, bsdD, ydzP, yxzL, yczO, yrzR, ykzL, yizB, yyzM, ykzW, ypzJ, yozS, ynzL, ygzC, ybzH, ykzS, yoyG, ytzI, yfzA, yojW, ypzF, epsK, yuzM, yuzL, yqzO, yszA, yczN, yyzH, yrzQ, ydzK, ypzH, yozT, yozV, ykzT, yizD, yoyC, yokU, mstX, yngHB, ylzI, ywzH, yoyF, spoVAEB, ynzK, spoVAEA, yhzD, yjzJ, yvzG, ytzJ, ydzQ, ykzU, fadG, yrzO, ylzH, yczL, yuzJ, ykzP, ypzI, ypzG, yuzI, yozY, yezG, ytrH, yozX

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