| Type | Description |
|---|---|
| Definition | nuclear RNA polymerase D1A |
| Date | Results | Publications |
|---|---|---|
| 2019-12-21 12:02:00 | The C-terminal domain is dispensable for Pol IV catalytic activity and Pol IV termination-dependent activation of RNA-DEPENDENT RNA POLYMERASE 2, which partners with Pol IV to generate dsRNA precursors of the 24 nt siRNAs that guide RdDM. | 31329950 |
| 2019-12-21 10:49:00 | The NRPD1 N-terminus is critical for robust Pol IV-dependent transcription, siRNA production and DNA methylation. | 31372633 |
| 2019-02-12 12:35:00 | Results show that although Pols IV and V are detected near transcript ends of the affected Pol II - transcribed genes, their role in limiting Pol II read-through is independent of siRNA biogenesis or cytosine methylation for the majority of these genes. The splicing was less efficient in pol IV or pol V mutant plants, compared to wild-type, suggesting that Pol IV or Pol V might affect pre-mRNA processing. [POL IV] | 29199514 |
| 2016-08-27 12:44:00 | The authors identified Pol IV and RDR2-dependent RNAs (P4R2 RNAs) that accumulate in dcl3 mutants and are diced into 24 nt RNAs by DCL3 in vitro. | 26430765 |
| 2011-12-31 11:26:00 | Data show that SHH1(AT1G15215), RDR2, CLASSY1, and RDM4 were co-purified with NRPD1(At1g63020), the largest subunit of Pol-IV. | 21811420 |
| Type | IDs |
|---|---|
| Synonymous | F16P17.19, F16P17_19, NRPD1, NUCLEAR RNA POLYMERASE D 1A, POL IVA, SDE4, SILENCING MOVEMENT DEFICIENT 2, SMD2, nuclear RNA polymerase D1A |
| Gene |
UniProtKB-ID:
NRPD1_ARATH,
A0A1P8ANM9_ARATH,
A0A1P8ANM7_ARATH,
A0A1P8ANM8_ARATH
UniprotKB:
Q9LQ02,
A0A1P8ANM9,
A0A1P8ANM7,
A0A1P8ANM8
UniParc:
UPI0008488000,
UPI00000AB588,
UPI000848775A,
UPI000848573B
EMBL:
AY826515,
AC011000,
AC010795,
DQ020657,
CP002684
EnsemblGenome:
AT1G63020
KO:
ath:AT1G63020
|
| Nucleutide sequences |
EMBL-CDS:
AEE34041.1,
AAY89363.1,
AEE34042.1,
AAF75815.1,
AAX12372.1,
AAG51604.1,
ANM58260.1,
ANM58259.1,
ANM58261.1
Gene_ORFName:
F16M19.19,
F16P17.19,
F16P17_19,
F16P17.19,
F16P17.19,
F16P17_19,
F16P17_19,
F16P17.19
EnsemblGenome_TRS:
AT1G63020.2,
AT1G63020.1
|
| Protein sequencees |
EnsemblGenome_PRO:
AT1G63020.2,
AT1G63020.1
RefSeq:
NP_001320709.1,
NP_001320708.1,
NP_176490.2,
NP_001185298.1,
NP_001320710.1
|
| Others |
UniRef100:
UniRef100_Q9LQ02,
UniRef100_A0A1P8ANM9,
UniRef100_A0A1P8ANM7
UniRef90:
UniRef90_Q9LQ02
UniRef50:
UniRef50_Q9LQ02
UniGene:
At.36192
|
| {{proteinIndex+1}} | mRNA | Protein | UniprotKB | Description | ||||
|---|---|---|---|---|---|---|---|---|
| Refseq |
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| Location | {{protein.contigId}} ( {{protein.positionStart}}..{{protein.positionEnd}} , {{protein.orientation}} ) | |||||||
| Conserved domain | Region: {{conservedDomain.region == '' || conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' || conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' || conservedDomain.family == null ? "-": conservedDomain.family}} CDD: {{conservedDomain.cdd}} - |
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