VIM1 - Zinc finger (C3HC4-type RING finger) family protein-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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842157 VIM1

基因描述

Type	Description
Definition	Zinc finger (C3HC4-type RING finger) family protein

研究结论

Date	Results	Publications
2015-03-07 11:01:00	VIM proteins function in transcriptional regulation via their roles in the MET1 DNA methylation pathway.	24762702
2012-09-22 11:33:00	Observed full-length VIM1 binds preferentially to hemi-methylated DNA with a single modified 5mCpG site. However, when 5hmC replaces one or both cytosine residues at a palindromic CpG site, VIM1 binds with approximately >/=10-fold lower affinity.	22459921
2010-01-21 00:00:00	findings suggest that VIM1 (AT1G57820) acts at the DNA methylation-histone interface to maintain centromeric heterochromatin	17242155
2010-01-21 00:00:00	VIM1, VIM2, and VIM3 have overlapping functions in maintenance of global CpG methylation and epigenetic transcriptional silencing.	18704160

名称对应

Type	IDs
Synonymous	F12K22.14, F12K22_14, ORTH2, ORTHRUS 2, VARIANT IN METHYLATION 1
Gene	UniProtKB-ID: ORTH2_ARATH UniprotKB: Q8VYZ0 UniParc: UPI00000A4202, UPI000034F4B8 EMBL: AY117235, CP002684, AC079732, AY065438 EnsemblGenome: AT1G57820 KO: ath:AT1G57820
Nucleutide sequences	EMBL-CDS: AEE33469.1, AAL38879.1, AEE33470.1, AAG29238.1, AAM51310.1, ANM59484.1 Gene_ORFName: F12K22.14 EnsemblGenome_TRS: AT1G57820.2, AT1G57820.1, AT1G57820.3
Protein sequencees	EnsemblGenome_PRO: AT1G57820.1, AT1G57820.3, AT1G57820.2 RefSeq: NP_176092.2, NP_001319260.1, NP_974045.1
Others	UniRef100: UniRef100_Q8VYZ0 UniRef90: UniRef90_Q8VYZ0 UniRef50: UniRef50_Q8VYZ0 UniGene: At.28484

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mRNA

Protein

UniprotKB

Description

Refseq

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Pubmed编号	文献信息	发表日期	相关基因
24762702	VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway. Epigenetics Molly S Shook , Eric J Richards	2014-07-01	VIM3, MET1, VIM1, VIM2
22459921	Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA. Protein Expr. Purif. Qin Yao , Chun-Xiao Song , Chuan He , Desigan Kumaran , John J Dunn	2012-05-01	VIM1
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
18643997	ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. Edward Kraft , Magnolia Bostick , Steven E Jacobsen , Judy Callis	2008-12-01	ORTHL, VIM3, VIM1, VIM2
18704160	Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet. Hye Ryun Woo , Travis A Dittmer , Eric J Richards	2008-01-01	VIM3, VIM1, VIM2
17892444	Plant SET- and RING-associated domain proteins in heterochromatinization. Plant J. Shiming Liu , Yu Yu , Ying Ruan , Denise Meyer , Michel Wolff , Lin Xu , Ning Wang , Andre Steinmetz , Wen-Hui Shen	2007-12-01	ORTHL, VIM1
17239600	The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. Lianna M Johnson , Magnolia Bostick , Xiaoyu Zhang , Edward Kraft , Ian Henderson , Judy Callis , Steven E Jacobsen	2007-02-20	SUVH6, SUVH4, DRM2, DRM1, VIM3, MET1, VIM1, CMT3
17242155	VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Genes Dev. Hye Ryun Woo , Olga Pontes , Craig S Pikaard , Eric J Richards	2007-02-01	HTB2, VIM3, AT5G59970, AT5G65360, HTR12, VIM1, VIM2
11130712	Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature A Theologis , J R Ecker , C J Palm , N A Federspiel , S Kaul , O White , J Alonso , H Altafi , R Araujo , C L Bowman , S Y Brooks , E Buehler , A Chan , Q Chao , H Chen , R F Cheuk , C W Chin , M K Chung , L Conn , A B Conway , A R Conway , T H Creasy , K Dewar , P Dunn , P Etgu , T V Feldblyum , J Feng , B Fong , C Y Fujii , J E Gill , A D Goldsmith , B Haas , N F Hansen , B Hughes , L Huizar , J L Hunter , J Jenkins , C Johnson-Hopson , S Khan , E Khaykin , C J Kim , H L Koo , I Kremenetskaia , D B Kurtz , A Kwan , B Lam , S Langin-Hooper , A Lee , J M Lee , C A Lenz , J H Li , Y Li , X Lin , S X Liu , Z A Liu , J S Luros , R Maiti , A Marziali , J Militscher , M Miranda , M Nguyen , W C Nierman , B I Osborne , G Pai , J Peterson , P K Pham , M Rizzo , T Rooney , D Rowley , H Sakano , S L Salzberg , J R Schwartz , P Shinn , A M Southwick , H Sun , L J Tallon , G Tambunga , M J Toriumi , C D Town , T Utterback , S Van Aken , M Vaysberg , V S Vysotskaia , M Walker , D Wu , G Yu , C M Fraser , J C Venter , R W Davis	2000-12-14	AT1G27045, AT1G24095, AT1G12855, AT1G63295, AT1G45163, AT1G20735, AT1G51035, AT1G55207, AT1G25145, AT1G53023, AT1G29025, AT1G19396, AT1G26515, AT1G78476, AT1G71866, AT1G36922, AT1G47578, AT1G11125, AT1G02575, AT1G25150, AT1G62914, AT1G51020, AT1G03365, AT1G53025, AT1G50732, AT1G09794, AT1G64583, AT1G05675, AT1G33612, AT1G03103, AT1G03106, AT1G05085, AT1G06135, AT1G06475, DSI-1VOC, AT1G07730, AT1G07985, AT1G08125, AT1G12805, AT1G13635, AT1G16515, AT1G17285, AT1G18265, AT1G19394, AT1G19397, AT1G21395, AT1G23465, AT1G23935, AT1G24580, AT1G26798, AT1G26799, AT1G28695, AT1G30475, AT1G31835, AT1G43666, AT1G45165, AT1G48195, AT1G48325, ATHAL3B, AT1G52315, CDT1, AT1G52855, AT1G52905, AT1G53285, AT1G53785, AT1G53815, AT1G54217, AT1G54575, AT1G55475, AT1G55675, AT1G56045, AT1G56415, AT1G58242, AT1G59865, SCRL5, AT1G61097, AT1G61105, BRD4, AT1G62085, AT1G63055, AT1G64065, AT1G64235, AT1G64255, AT1G72645, AT1G76955, AT1G77885, GL22, AT1G03495, AT1G03982, AT1G04625, AT1G05894, AT1G06645, AT1G06923, YAB2, SCRL3, AT1G09157, AT1G10417, AT1G10850, AT1G12064

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