PRP39 - Tetratricopeptide repeat (TPR)-like superfamily protein-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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839314 PRP39

基因描述

Type	Description
Definition	Tetratricopeptide repeat (TPR)-like superfamily protein

研究结论

Date	Results	Publications
2018-07-21 10:53:00	RNA-seq experiments performed using two independent prp39a alleles revealed hundreds of common genes undergoing changes in alternative splicing, including PRP39a itself, a second putative U1 snRNP component PRP40b, and genes encoding a number of general transcription-related proteins.	28971960
2010-01-21 00:00:00	A novel Arabidopsis gene, designated AT PRP39-1, affects flowering time in A. thaliana. [AT PRP39-1]	17380304

名称对应

Type	IDs
Synonymous	F20D22.14
Gene	UniProtKB-ID: Q93ZR3_ARATH, A0A384LP66_ARATH, A0A1P8ATH2_ARATH, F4I448_ARATH, F4I450_ARATH UniprotKB: Q93ZR3, A0A384LP66, A0A1P8ATH2, F4I448, F4I450 UniParc: UPI0001E92C52, UPI00000A1B08, UPI000848ED81, UPI0001A7B280 EMBL: LUHQ01000001, AY091187, AY087878, CP002684, AY056321 EnsemblGenome: AT1G04080 KO: ath:AT1G04080
Nucleutide sequences	EMBL-CDS: AAL07170.1, AEE27652.1, AAM14126.1, ANM59954.1, AAM65430.1, OAP12432.1, ANM59955.1, AEE27654.1, AEE27653.1 Gene_ORFName: F20D22.14, F20D22.14, F20D22.14, F20D22.14
Protein sequencees	RefSeq: NP_563700.1, NP_001154302.1, NP_001184905.1, NP_001322270.1, NP_001322271.1
Others	UniRef100: UniRef100_F4I450, UniRef100_F4I448, UniRef100_Q93ZR3 UniRef90: UniRef90_F4I450, UniRef90_F4I448 UniRef50: UniRef50_F4I448, UniRef50_F4I450 UniGene: At.10583

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mRNA

Protein

UniprotKB

Description

Refseq

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Ensembl: {{protein.nucleotideEnsembl}}

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Location

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Pubmed编号	文献信息	发表日期	相关基因
28971960	A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a. Genetics Tatsuo Kanno , Wen-Dar Lin , Jason L Fu , Chia-Liang Chang , Antonius J M Matzke , Marjori Matzke	2017-12-01	-
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
21166475	Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. J. Proteome Res. Jun Ito , Tanveer S Batth , Christopher J Petzold , Alyssa M Redding-Johanson , Aindrila Mukhopadhyay , Robert Verboom , Etienne H Meyer , A Harvey Millar , Joshua L Heazlewood	2011-04-01	AT3G08943, AT3G08947, AT3G07030, AT3G42170, AT4G22285, AT1G24800, AT1G25055, AT1G24881, AT1G25211, AT2G01250, AT2G01690, GSTZ1, AT2G02400, AL6, CAND1, UBC2, GEK1, AT2G03820, CR88, AT2G04390, AT2G04400, AT2G04520, AT2G05220, ACO3, AT2G05920, HEN2, PFD1, AT2G07360, AT2G09990, ABH1, DRP3B, PIP, UGT73B4, NIR1, SQN, AT2G15860, HB1, THY-1, PAP10, MCM4, AT2G16485, ASE1, ROC3, MSI2, UBC23, AT2G16940, TRN1, DSK2, AT2G17280, CPK6, AT2G17360, NTRA, AT2G17930, ATSLY1, EMB2296, PIN1AT, AT2G18110, AT2G18220, COAD, TPS11, AT2G18740, NAP1;2, FVE, CDA1, PRMT1A, PRF1, AT2G20140, CLASP, RPN1A, AT2G20760, AT2G21130, TIM, AT2G21250, UFD1, AT2G21390, CCR2, AT2G22125, AAT, AT2G22420, GEM, SNRK2.9, AT2G23070, PAB4, AT2G23820, SNRNP-G, eIFiso4G2, AT2G24190, AT2G24200, AT2G24590, MAPR2, AT2G25670, AT2G25970, SEH, FUS12, PAG1, CAM5, AGO4, SE, AAO3
17380304	The Arabidopsis thaliana AT PRP39-1 gene, encoding a tetratricopeptide repeat protein with similarity to the yeast pre-mRNA processing protein PRP39, affects flowering time. Plant Cell Rep Cunxi Wang , Qing Tian , Zhenglin Hou , Mark Mucha , Milo Aukerman , Odd-Arne Olsen	2007-08-01	-
16807317	Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. Nucleic Acids Res. Sergio de la Fuente van Bentem , Dorothea Anrather , Elisabeth Roitinger , Armin Djamei , Thomas Hufnagl , Andrea Barta , Edina Csaszar , Ilse Dohnal , David Lecourieux , Heribert Hirt	2006-01-01	AT2G24590, AT2G29210, RSZ33, SCL30A, SRp34a, SRPK4, RSZ32, SCL30, RSP31, AT3G63400, RSP35, SRZ-22, BTR1L, AT5G51300, ATRSP41, SC35, AT1G07350, SR45, PRP39, ESP3, SR33
11130712	Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature A Theologis , J R Ecker , C J Palm , N A Federspiel , S Kaul , O White , J Alonso , H Altafi , R Araujo , C L Bowman , S Y Brooks , E Buehler , A Chan , Q Chao , H Chen , R F Cheuk , C W Chin , M K Chung , L Conn , A B Conway , A R Conway , T H Creasy , K Dewar , P Dunn , P Etgu , T V Feldblyum , J Feng , B Fong , C Y Fujii , J E Gill , A D Goldsmith , B Haas , N F Hansen , B Hughes , L Huizar , J L Hunter , J Jenkins , C Johnson-Hopson , S Khan , E Khaykin , C J Kim , H L Koo , I Kremenetskaia , D B Kurtz , A Kwan , B Lam , S Langin-Hooper , A Lee , J M Lee , C A Lenz , J H Li , Y Li , X Lin , S X Liu , Z A Liu , J S Luros , R Maiti , A Marziali , J Militscher , M Miranda , M Nguyen , W C Nierman , B I Osborne , G Pai , J Peterson , P K Pham , M Rizzo , T Rooney , D Rowley , H Sakano , S L Salzberg , J R Schwartz , P Shinn , A M Southwick , H Sun , L J Tallon , G Tambunga , M J Toriumi , C D Town , T Utterback , S Van Aken , M Vaysberg , V S Vysotskaia , M Walker , D Wu , G Yu , C M Fraser , J C Venter , R W Davis	2000-12-14	AT1G27045, AT1G24095, AT1G12855, AT1G63295, AT1G45163, AT1G20735, AT1G51035, AT1G55207, AT1G25145, AT1G53023, AT1G29025, AT1G19396, AT1G26515, AT1G78476, AT1G71866, AT1G36922, AT1G47578, AT1G11125, AT1G02575, AT1G25150, AT1G62914, AT1G51020, AT1G03365, AT1G53025, AT1G50732, AT1G09794, AT1G64583, AT1G05675, AT1G33612, AT1G03103, AT1G03106, AT1G05085, AT1G06135, AT1G06475, DSI-1VOC, AT1G07730, AT1G07985, AT1G08125, AT1G12805, AT1G13635, AT1G16515, AT1G17285, AT1G18265, AT1G19394, AT1G19397, AT1G21395, AT1G23465, AT1G23935, AT1G24580, AT1G26798, AT1G26799, AT1G28695, AT1G30475, AT1G31835, AT1G43666, AT1G45165, AT1G48195, AT1G48325, ATHAL3B, AT1G52315, CDT1, AT1G52855, AT1G52905, AT1G53285, AT1G53785, AT1G53815, AT1G54217, AT1G54575, AT1G55475, AT1G55675, AT1G56045, AT1G56415, AT1G58242, AT1G59865, SCRL5, AT1G61097, AT1G61105, BRD4, AT1G62085, AT1G63055, AT1G64065, AT1G64235, AT1G64255, AT1G72645, AT1G76955, AT1G77885, GL22, AT1G03495, AT1G03982, AT1G04625, AT1G05894, AT1G06645, AT1G06923, YAB2, SCRL3, AT1G09157, AT1G10417, AT1G10850, AT1G12064

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