AT5G60980 - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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836219 AT5G60980

基因描述

Type	Description
Definition	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

研究结论

Date	Results	Publications
2017-12-07 14:36:00	Our results indicate that AtMBD6 is involved in RNA-mediated gene silencing and it binds to RNA binding proteins like AtRPS2C, AtAGO4 and AtNTF2. AtMBD6 also interacts with histone deacetylase AtHDA6 that might have a role in chromatin condensation at the targets of RdDM. [AtNTF2]	28229965

名称对应

Type	IDs
Synonymous	MSL3.12, MSL3_12
Gene	UniProtKB-ID: NTF2_ARATH, A0A654GD21_ARATH UniprotKB: Q9FME2, A0A654GD21 UniParc: UPI00001628EF, UPI000000BE8C EMBL: AY085400, AB008269, AY062108, BT003010, CP002688, CACRSJ010000110, CACSHJ010000096 EnsemblGenome: AT5G60980 KO: ath:AT5G60980
Nucleutide sequences	EMBL-CDS: AAO23575.1, AED97407.1, AED97406.1, ANM69708.1, AAL32982.1, AAM62628.1, BAB10647.1, ANM69709.1, VYS71028.1, CAA0411198.1 Gene_ORFName: MSL3.12, AN1_LOCUS26406, C24_LOCUS26228 EnsemblGenome_TRS: AT5G60980.1, AT5G60980.3, AT5G60980.4, AT5G60980.2
Protein sequencees	EnsemblGenome_PRO: AT5G60980.4, AT5G60980.2, AT5G60980.3, AT5G60980.1 RefSeq: NP_851235.1, NP_001331369.1, NP_200906.2, NP_001331368.1
Others	UniRef100: UniRef100_Q9FME2 UniRef90: UniRef90_Q9FME2 UniRef50: UniRef50_Q9FME2 UniGene: At.27353

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mRNA

Protein

UniprotKB

Description

Refseq

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Pubmed编号	文献信息	发表日期	相关基因
32344669	Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Biomolecules Marcel Bach-Pages , Felix Homma , Jiorgos Kourelis , Farnusch Kaschani , Shabaz Mohammed , Markus Kaiser , Renier A L van der Hoorn , Alfredo Castello , Gail M Preston	2020-04-24	-
28887381	Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. Mol Cell Proteomics Zachary McBride , Donglai Chen , Christy Reick , Jun Xie , Daniel B Szymanski	2017-11-01	-
28229965	AtMBD6, a methyl CpG binding domain protein, maintains gene silencing in Arabidopsis by interacting with RNA binding proteins. J. Biosci. Adwaita Prasad Parida , Amrapali Sharma , Arun Kumar Sharma	2017-03-01	-
27729395	In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Plant Cell Marlene Reichel , Yalin Liao , Mandy Rettel , Chikako Ragan , Maurits Evers , Anne-Marie Alleaume , Rastislav Horos , Matthias W Hentze , Thomas Preiss , Anthony A Millar	2016-10-01	-
23334891	Interactome analysis reveals versatile functions of Arabidopsis COLD SHOCK DOMAIN PROTEIN 3 in RNA processing within the nucleus and cytoplasm. Cell Stress Chaperones Myung-Hee Kim , Yutaka Sonoda , Kentaro Sasaki , Hironori Kaminaka , Ryozo Imai	2013-07-01	CSP3, CCR2, FLA16, AT2G36170, LOS2, AT2G37220, AT3G09690, AT3G14415, JR1, AT3G03920, AT3G23390, PTAC16, AT3G49910, CP29, AT3G59810, AT4G10970, AT4G23890, AT4G32420, AT5G05210, AT5G10350, AT5G11200, AT5G13590, AT5G13650, PRR7, NIC2, PFD5, SOS4, AT5G42050, PABN1, AT5G60980, PRH75, AT5G65260, AVP1, DCP5, AT1G28050, ANNAT1, NUC-L1, SPL4, SKIP
22010978	Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. J. Proteome Res. Verena Ibl , Edina Csaszar , Nicole Schlager , Susanne Neubert , Christoph Spitzer , Marie-Theres Hauser	2012-01-01	-
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
20733066	In planta changes in protein phosphorylation induced by the plant hormone abscisic acid. Proc Natl Acad Sci U S A Kelli G Kline , Gregory A Barrett-Wilt , Michael R Sussman	2010-09-07	-
11130714	Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature S Tabata , T Kaneko , Y Nakamura , H Kotani , T Kato , E Asamizu , N Miyajima , S Sasamoto , T Kimura , T Hosouchi , K Kawashima , M Kohara , M Matsumoto , A Matsuno , A Muraki , S Nakayama , N Nakazaki , K Naruo , S Okumura , S Shinpo , C Takeuchi , T Wada , A Watanabe , M Yamada , M Yasuda , S Sato , M de la Bastide , E Huang , L Spiegel , L Gnoj , A O'Shaughnessy , R Preston , K Habermann , J Murray , D Johnson , T Rohlfing , J Nelson , T Stoneking , K Pepin , J Spieth , M Sekhon , J Armstrong , M Becker , E Belter , H Cordum , M Cordes , L Courtney , W Courtney , M Dante , H Du , J Edwards , J Fryman , B Haakensen , E Lamar , P Latreille , S Leonard , R Meyer , E Mulvaney , P Ozersky , A Riley , C Strowmatt , C Wagner-McPherson , A Wollam , M Yoakum , M Bell , N Dedhia , L Parnell , R Shah , M Rodriguez , L H See , D Vil , J Baker , K Kirchoff , K Toth , L King , A Bahret , B Miller , M Marra , R Martienssen , W R McCombie , R K Wilson , G Murphy , I Bancroft , G Volckaert , R Wambutt , A DÃ¼sterhÃ¶ft , W Stiekema , T Pohl , K D Entian , N Terryn , N Hartley , E Bent , S Johnson , S A Langham , B McCullagh , J Robben , B Grymonprez , W Zimmermann , U Ramsperger , H Wedler , K Balke , E Wedler , S Peters , M van Staveren , W Dirkse , P Mooijman , R K Lankhorst , T Weitzenegger , G Bothe , M Rose , J Hauf , S Berneiser , S Hempel , M Feldpausch , S Lamberth , R Villarroel , J Gielen , W Ardiles , O Bents , K Lemcke , G Kolesov , K Mayer , S Rudd , H Schoof , C Schueller , P Zaccaria , H W Mewes , M Bevan , P Fransz , Kazusa DNA Research Institute , Cold Spring Harbor and Washington University in St Louis Sequencing Consortium , European Union Arabidopsis Genome Sequencing Consortium	2000-12-14	AT5G10605, AT5G08305, AT5G19025, AT5G67265, AT5G53635, AT5G60335, AT5G62865, AT5G28442, AT5G04045, AT5G07225, MIR162A, AT5G09225, AT5G10625, AT5G10745, AT5G18475, AT5G18525, AT5G18636, AT5G20045, AGP41, AT5G26805, AT5G28237, AT5G35732, AT5G35737, AT5G37478, AT5G42235, AT5G42825, AT5G43185, AT5G44005, AT5G44565, AT5G45275, AT5G45660, AT5G48205, AT5G48335, HINT3, AT5G48657, AT5G49015, AT5G52547, AT5G55565, AT5G57565, AT5G66005, AT5G67245, AT5G08055, AT5G06043, AT5G01881, AT5G19172, AT5G19175, AT5G16486, AT5G03795, AT5G03406, AT5G22791, AT5G16453, AT5G23212, AT5G19473, AT5G19485, AT5G19315, AT5G08505, AT5G07740, AT5G23035, AT5G18403, AT5G18407, AT5G08315, AT5G04347, AT5G24318, AT5G26622, AT5G27495, AT5G28288, AT5G32460, AT5G32619, AT5G35050, AT5G35195, AT5G35660, AT5G35926, AT5G36001, AT5G36228, AT5G36300, AT5G37473, AT5G37474, LCR58, AT5G38344, SPH8, AT5G39365, AT5G40405, AT5G42146, AT5G42223, AT5G42232, LCR57, LCR28, AT5G43285, AT5G43401, AT5G43513, AT5G43518, AT5G43525, AT5G44973, SCRL27, AT5G46871, AT5G46873, AT5G46874, AT5G46877, LCR20

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