VIM3 - Zinc finger (C3HC4-type RING finger) family protein-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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833951 VIM3

基因描述

Type	Description
Definition	Zinc finger (C3HC4-type RING finger) family protein

研究结论

Date	Results	Publications
2015-03-07 11:01:00	VIM proteins function in transcriptional regulation via their roles in the MET1 DNA methylation pathway.	24762702
2010-01-21 00:00:00	VIM1, VIM2, and VIM3 have overlapping functions in maintenance of global CpG methylation and epigenetic transcriptional silencing.	18704160
2010-01-21 00:00:00	ORTH proteins are ubiquitin E3 ligases that regulate DNA methylation. The ORTH1 RING domain promotes ubiquitylation, and overexpression leads to an altered flowering time because of decreased methylation of FWA.	18643997

名称对应

Type	IDs
Synonymous	MIJ24.3, MIJ24_3, ORTH1, ORTHRUS 1, VARIANT IN METHYLATION 3
Gene	UniProtKB-ID: ORTH1_ARATH, A0A654G6G1_ARATH UniprotKB: Q9FKA7, A0A654G6G1 UniParc: UPI000009FEAE EMBL: CACRSJ010000110, AK221256, AK176778, CP002688, AB012243, BT010573 EnsemblGenome: AT5G39550 KO: ath:AT5G39550
Nucleutide sequences	EMBL-CDS: AAQ65196.1, BAB08886.1, AED94446.1, BAD93904.1, BAD44541.1, VYS68732.1 Gene_ORFName: MIJ24.3, AN1_LOCUS24119 EnsemblGenome_TRS: AT5G39550.1
Protein sequencees	EnsemblGenome_PRO: AT5G39550.1 RefSeq: NP_198771.1
Others	UniRef100: UniRef100_Q9FKA7 UniRef90: UniRef90_Q9FKA7 UniRef50: UniRef50_Q8VYZ0 UniGene: At.30336

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mRNA

Protein

UniprotKB

Description

Refseq

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Location

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Pubmed编号	文献信息	发表日期	相关基因
24762702	VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway. Epigenetics Molly S Shook , Eric J Richards	2014-07-01	VIM3, MET1, VIM1, VIM2
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
18643997	ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. Plant J. Edward Kraft , Magnolia Bostick , Steven E Jacobsen , Judy Callis	2008-12-01	ORTHL, VIM3, VIM1, VIM2
18704160	Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet. Hye Ryun Woo , Travis A Dittmer , Eric J Richards	2008-01-01	VIM3, VIM1, VIM2
17239600	The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. Lianna M Johnson , Magnolia Bostick , Xiaoyu Zhang , Edward Kraft , Ian Henderson , Judy Callis , Steven E Jacobsen	2007-02-20	SUVH6, SUVH4, DRM2, DRM1, VIM3, MET1, VIM1, CMT3
17242155	VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. Genes Dev. Hye Ryun Woo , Olga Pontes , Craig S Pikaard , Eric J Richards	2007-02-01	HTB2, VIM3, AT5G59970, AT5G65360, HTR12, VIM1, VIM2
11130714	Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature S Tabata , T Kaneko , Y Nakamura , H Kotani , T Kato , E Asamizu , N Miyajima , S Sasamoto , T Kimura , T Hosouchi , K Kawashima , M Kohara , M Matsumoto , A Matsuno , A Muraki , S Nakayama , N Nakazaki , K Naruo , S Okumura , S Shinpo , C Takeuchi , T Wada , A Watanabe , M Yamada , M Yasuda , S Sato , M de la Bastide , E Huang , L Spiegel , L Gnoj , A O'Shaughnessy , R Preston , K Habermann , J Murray , D Johnson , T Rohlfing , J Nelson , T Stoneking , K Pepin , J Spieth , M Sekhon , J Armstrong , M Becker , E Belter , H Cordum , M Cordes , L Courtney , W Courtney , M Dante , H Du , J Edwards , J Fryman , B Haakensen , E Lamar , P Latreille , S Leonard , R Meyer , E Mulvaney , P Ozersky , A Riley , C Strowmatt , C Wagner-McPherson , A Wollam , M Yoakum , M Bell , N Dedhia , L Parnell , R Shah , M Rodriguez , L H See , D Vil , J Baker , K Kirchoff , K Toth , L King , A Bahret , B Miller , M Marra , R Martienssen , W R McCombie , R K Wilson , G Murphy , I Bancroft , G Volckaert , R Wambutt , A DÃ¼sterhÃ¶ft , W Stiekema , T Pohl , K D Entian , N Terryn , N Hartley , E Bent , S Johnson , S A Langham , B McCullagh , J Robben , B Grymonprez , W Zimmermann , U Ramsperger , H Wedler , K Balke , E Wedler , S Peters , M van Staveren , W Dirkse , P Mooijman , R K Lankhorst , T Weitzenegger , G Bothe , M Rose , J Hauf , S Berneiser , S Hempel , M Feldpausch , S Lamberth , R Villarroel , J Gielen , W Ardiles , O Bents , K Lemcke , G Kolesov , K Mayer , S Rudd , H Schoof , C Schueller , P Zaccaria , H W Mewes , M Bevan , P Fransz , Kazusa DNA Research Institute , Cold Spring Harbor and Washington University in St Louis Sequencing Consortium , European Union Arabidopsis Genome Sequencing Consortium	2000-12-14	AT5G10605, AT5G08305, AT5G19025, AT5G67265, AT5G53635, AT5G60335, AT5G62865, AT5G28442, AT5G04045, AT5G07225, MIR162A, AT5G09225, AT5G10625, AT5G10745, AT5G18475, AT5G18525, AT5G18636, AT5G20045, AGP41, AT5G26805, AT5G28237, AT5G35732, AT5G35737, AT5G37478, AT5G42235, AT5G42825, AT5G43185, AT5G44005, AT5G44565, AT5G45275, AT5G45660, AT5G48205, AT5G48335, HINT3, AT5G48657, AT5G49015, AT5G52547, AT5G55565, AT5G57565, AT5G66005, AT5G67245, AT5G08055, AT5G06043, AT5G01881, AT5G19172, AT5G19175, AT5G16486, AT5G03795, AT5G03406, AT5G22791, AT5G16453, AT5G23212, AT5G19473, AT5G19485, AT5G19315, AT5G08505, AT5G07740, AT5G23035, AT5G18403, AT5G18407, AT5G08315, AT5G04347, AT5G24318, AT5G26622, AT5G27495, AT5G28288, AT5G32460, AT5G32619, AT5G35050, AT5G35195, AT5G35660, AT5G35926, AT5G36001, AT5G36228, AT5G36300, AT5G37473, AT5G37474, LCR58, AT5G38344, SPH8, AT5G39365, AT5G40405, AT5G42146, AT5G42223, AT5G42232, LCR57, LCR28, AT5G43285, AT5G43401, AT5G43513, AT5G43518, AT5G43525, AT5G44973, SCRL27, AT5G46871, AT5G46873, AT5G46874, AT5G46877, LCR20

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