DPD1 - Polynucleotidyl transferase, ribonuclease H-like superfamily protein-BMKCloudï½ç¾è¿å®¢äº

例如："NBL1", "4681", "drought"

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832752 DPD1

基因描述

Type	Description
Definition	Polynucleotidyl transferase, ribonuclease H-like superfamily protein

研究结论

Date	Results	Publications
2012-09-15 11:14:00	Data show that the defects in ribonucleotide reductase DPD2 (At2g21790) indirectly compromise the activity of DPD1 nuclease (At5g26940) in plastids, suggesting a different regulation of organellar DNA degradation in pollen.	22239102
2012-03-31 11:49:00	Data discuss a possible role of organelle DNA degradation mediated by DPD1, based on a DPD1 expression profile studied using in silico analyses.	21852754
2011-10-04 10:28:00	DPD1 encodes a protein belonging to the exonuclease family. It has Mg2+-dependent exonuclease activity and is dual-targeted to plastids and mitochondria. [DPD1]	21521697

名称对应

Type	IDs
Synonymous	F2P16.200, F2P16_200, defective in pollen organelle DNA degradation1
Gene	UniProtKB-ID: DPD1_ARATH, A0A654G4R5_ARATH UniprotKB: Q682U6, A0A654G4R5 UniParc: UPI0000048BAE EMBL: AK175526, CP002688, AK175271, CACRSJ010000110, AY087151, BT025876, AF007270 EnsemblGenome: AT5G26940 KO: ath:AT5G26940
Nucleutide sequences	EMBL-CDS: BAD43289.1, ABF85778.1, BAD43034.1, AED93630.1, AED93632.1, AED93629.1, AAM64709.1, AED93631.1, VYS68036.1 Gene_ORFName: F2P16.200, AN1_LOCUS23431 EnsemblGenome_TRS: AT5G26940.3, AT5G26940.2, AT5G26940.4, AT5G26940.1
Protein sequencees	EnsemblGenome_PRO: AT5G26940.2, AT5G26940.3, AT5G26940.1, AT5G26940.4 RefSeq: NP_851083.1, NP_198046.1, NP_974842.1, NP_851082.1
Others	UniRef100: UniRef100_Q682U6 UniRef90: UniRef90_Q682U6 UniRef50: UniRef50_Q682U6 UniGene: At.20000

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mRNA

Protein

UniprotKB

Description

Refseq

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Pubmed编号	文献信息	发表日期	相关基因
22239102	Mutations defective in ribonucleotide reductase activity interfere with pollen plastid DNA degradation mediated by DPD1 exonuclease. Plant J. Lay Yin Tang , Ryo Matsushima , Wataru Sakamoto	2012-05-01	RNR1, AT5G26940
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
21852754	Tissue-specific organelle DNA degradation mediated by DPD1 exonuclease. Plant Signal Behav Lay Yin Tang , Wataru Sakamoto	2011-09-01	-
21521697	A conserved, MgÂ²+-dependent exonuclease degrades organelle DNA during Arabidopsis pollen development. Plant Cell Ryo Matsushima , Lay Yin Tang , Lingang Zhang , Hiroshi Yamada , David Twell , Wataru Sakamoto	2011-04-01	AT5G26940
11130714	Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Nature S Tabata , T Kaneko , Y Nakamura , H Kotani , T Kato , E Asamizu , N Miyajima , S Sasamoto , T Kimura , T Hosouchi , K Kawashima , M Kohara , M Matsumoto , A Matsuno , A Muraki , S Nakayama , N Nakazaki , K Naruo , S Okumura , S Shinpo , C Takeuchi , T Wada , A Watanabe , M Yamada , M Yasuda , S Sato , M de la Bastide , E Huang , L Spiegel , L Gnoj , A O'Shaughnessy , R Preston , K Habermann , J Murray , D Johnson , T Rohlfing , J Nelson , T Stoneking , K Pepin , J Spieth , M Sekhon , J Armstrong , M Becker , E Belter , H Cordum , M Cordes , L Courtney , W Courtney , M Dante , H Du , J Edwards , J Fryman , B Haakensen , E Lamar , P Latreille , S Leonard , R Meyer , E Mulvaney , P Ozersky , A Riley , C Strowmatt , C Wagner-McPherson , A Wollam , M Yoakum , M Bell , N Dedhia , L Parnell , R Shah , M Rodriguez , L H See , D Vil , J Baker , K Kirchoff , K Toth , L King , A Bahret , B Miller , M Marra , R Martienssen , W R McCombie , R K Wilson , G Murphy , I Bancroft , G Volckaert , R Wambutt , A DÃ¼sterhÃ¶ft , W Stiekema , T Pohl , K D Entian , N Terryn , N Hartley , E Bent , S Johnson , S A Langham , B McCullagh , J Robben , B Grymonprez , W Zimmermann , U Ramsperger , H Wedler , K Balke , E Wedler , S Peters , M van Staveren , W Dirkse , P Mooijman , R K Lankhorst , T Weitzenegger , G Bothe , M Rose , J Hauf , S Berneiser , S Hempel , M Feldpausch , S Lamberth , R Villarroel , J Gielen , W Ardiles , O Bents , K Lemcke , G Kolesov , K Mayer , S Rudd , H Schoof , C Schueller , P Zaccaria , H W Mewes , M Bevan , P Fransz , Kazusa DNA Research Institute , Cold Spring Harbor and Washington University in St Louis Sequencing Consortium , European Union Arabidopsis Genome Sequencing Consortium	2000-12-14	AT5G10605, AT5G08305, AT5G19025, AT5G67265, AT5G53635, AT5G60335, AT5G62865, AT5G28442, AT5G04045, AT5G07225, MIR162A, AT5G09225, AT5G10625, AT5G10745, AT5G18475, AT5G18525, AT5G18636, AT5G20045, AGP41, AT5G26805, AT5G28237, AT5G35732, AT5G35737, AT5G37478, AT5G42235, AT5G42825, AT5G43185, AT5G44005, AT5G44565, AT5G45275, AT5G45660, AT5G48205, AT5G48335, HINT3, AT5G48657, AT5G49015, AT5G52547, AT5G55565, AT5G57565, AT5G66005, AT5G67245, AT5G08055, AT5G06043, AT5G01881, AT5G19172, AT5G19175, AT5G16486, AT5G03795, AT5G03406, AT5G22791, AT5G16453, AT5G23212, AT5G19473, AT5G19485, AT5G19315, AT5G08505, AT5G07740, AT5G23035, AT5G18403, AT5G18407, AT5G08315, AT5G04347, AT5G24318, AT5G26622, AT5G27495, AT5G28288, AT5G32460, AT5G32619, AT5G35050, AT5G35195, AT5G35660, AT5G35926, AT5G36001, AT5G36228, AT5G36300, AT5G37473, AT5G37474, LCR58, AT5G38344, SPH8, AT5G39365, AT5G40405, AT5G42146, AT5G42223, AT5G42232, LCR57, LCR28, AT5G43285, AT5G43401, AT5G43513, AT5G43518, AT5G43525, AT5G44973, SCRL27, AT5G46871, AT5G46873, AT5G46874, AT5G46877, LCR20

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