LDL3 - LSD1-like 3-BMKCloudï½ç¾è¿å®¢äº

827325 LDL3

基因描述

Type	Description
Definition	LSD1-like 3

研究结论

Date	Results	Publications
2019-06-01 10:06:00	Study demonstrated that Arabidopsis LDL3 specifically demethylates dimethylated lysine 4 of histone H3 during callus formation, thereby poising genes for activation in response to subsequent shoot induction. The primed histone demethylation regulated by LDL3 is an epigenetic mechanism that provides plant cells with shoot regenerative competency during callus formation.	30992430

名称对应

Type	IDs
Synonymous	DL4185W, FCAALL.342, LSD1-like 3
Gene	UniProtKB-ID: LDL3_ARATH, A0A654FPU5_ARATH UniprotKB: F4JLS1, A0A654FPU5 UniParc: UPI0001A7B0E4, UPI0004AC3F63 EMBL: Z97340, AL161543, CACRSJ010000109, CP002687, EF442804, AY924818 EnsemblGenome: AT4G16310 KO: ath:AT4G16310
Nucleutide sequences	EMBL-CDS: CAB10408.1, ANM66791.1, ANM66789.1, ANM66788.1, CAB78673.1, CAB78674.1, AAX23893.1, ABR13972.1, CAB10409.1, AEE83730.1, ANM66790.1, VYS62897.1 Gene_ORFName: dl4185w/dl4190w, FCAALL.342/FCAALL.344, AN1_LOCUS18319 EnsemblGenome_TRS: AT4G16310.4, AT4G16310.2, AT4G16310.1, AT4G16310.3, AT4G16310.5
Protein sequencees	EnsemblGenome_PRO: AT4G16310.1, AT4G16310.2, AT4G16310.4, AT4G16310.5, AT4G16310.3 RefSeq: NP_001328665.1, NP_001319957.1, NP_001328664.1, NP_193364.5, NP_001328666.1
Others	UniRef100: UniRef100_F4JLS1 UniRef90: UniRef90_F4JLS1 UniRef50: UniRef50_F4JLS1 UniGene: At.54355

全选

{{proteinIndex+1}}	mRNA	Protein	UniprotKB	Description
Refseq	{{protein.nucleotideVersion}} Ensembl: {{protein.nucleotideEnsembl}}	{{protein.proteinVersion}} Ensembl: {{protein.proteinEnsembl}}	{{uniprot}}	Definition: {{{protein.definition}}} Transcript Veriant:{{protein.transcriptVeriant}} Status: {{protein.status}}
Location	( {{protein.positionStart}}..{{protein.positionEnd}} )
Conserved domain	Region: {{conservedDomain.region == '' \|\| conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' \|\| conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' \|\| conservedDomain.family == null ? "-": conservedDomain.family}} CDD:	{{conservedDomain.comments == '' \|\| conservedDomain.comments == null ? "-" : conservedDomain.comments }}	Region: {{conservedDomain.region == '' \|\| conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' \|\| conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' \|\| conservedDomain.family == null ? "-": conservedDomain.family}} CDD:	{{conservedDomain.comments == '' \|\| conservedDomain.comments == null ? "-" : conservedDomain.comments }}

mRNA

Protein

UniprotKB

Description

Refseq

Ensembl: {{protein.nucleotideEnsembl}}

Ensembl: {{protein.proteinEnsembl}}

Definition: {{{protein.definition}}}

Transcript Veriant:{{protein.transcriptVeriant}}

Status: {{protein.status}}

Location

( {{protein.positionStart}}..{{protein.positionEnd}} )

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全选

Pubmed编号	文献信息	发表日期	相关基因
30992430	Primed histone demethylation regulates shoot regenerative competency. Nat Commun Hiroya Ishihara , Kaoru Sugimoto , Paul T Tarr , Haruka Temman , Satoshi Kadokura , Yayoi Inui , Takuya Sakamoto , Taku Sasaki , Mitsuhiro Aida , Takamasa Suzuki , Soichi Inagaki , Kengo Morohashi , Motoaki Seki , Tetsuji Kakutani , Elliot M Meyerowitz , Sachihiro Matsunaga	2019-04-16	-
21873635	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas	2011-09-01	-
10617198	Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Nature K Mayer , C SchÃ¼ller , R Wambutt , G Murphy , G Volckaert , T Pohl , A DÃ¼sterhÃ¶ft , W Stiekema , K D Entian , N Terryn , B Harris , W Ansorge , P Brandt , L Grivell , M Rieger , M Weichselgartner , V de Simone , B Obermaier , R Mache , M MÃ¼ller , M Kreis , M Delseny , P Puigdomenech , M Watson , T Schmidtheini , B Reichert , D Portatelle , M Perez-Alonso , M Boutry , I Bancroft , P Vos , J Hoheisel , W Zimmermann , H Wedler , P Ridley , S A Langham , B McCullagh , L Bilham , J Robben , J Van der Schueren , B Grymonprez , Y J Chuang , F Vandenbussche , M Braeken , I Weltjens , M Voet , I Bastiaens , R Aert , E Defoor , T Weitzenegger , G Bothe , U Ramsperger , H Hilbert , M Braun , E Holzer , A Brandt , S Peters , M van Staveren , W Dirske , P Mooijman , R Klein Lankhorst , M Rose , J Hauf , P KÃ¶tter , S Berneiser , S Hempel , M Feldpausch , S Lamberth , H Van den Daele , A De Keyser , C Buysshaert , J Gielen , R Villarroel , R De Clercq , M Van Montagu , J Rogers , A Cronin , M Quail , S Bray-Allen , L Clark , J Doggett , S Hall , M Kay , N Lennard , K McLay , R Mayes , A Pettett , M A Rajandream , M Lyne , V Benes , S Rechmann , D Borkova , H BlÃ¶cker , M Scharfe , M Grimm , T H LÃ¶hnert , S Dose , M de Haan , A Maarse , M SchÃ¤fer , S MÃ¼ller-Auer , C Gabel , M Fuchs , B Fartmann , K Granderath , D Dauner , A Herzl , S Neumann , A Argiriou , D Vitale , R Liguori , E Piravandi , O Massenet , F Quigley , G Clabauld , A MÃ¼ndlein , R Felber , S Schnabl , R Hiller , W Schmidt , A Lecharny , S Aubourg , F Chefdor , R Cooke , C Berger , A Montfort , E Casacuberta , T Gibbons , N Weber , M Vandenbol , M Bargues , J Terol , A Torres , A Perez-Perez , B Purnelle , E Bent , S Johnson , D Tacon , T Jesse , L Heijnen , S Schwarz , P Scholler , S Heber , P Francs , C Bielke , D Frishman , D Haase , K Lemcke , H W Mewes , S Stocker , P Zaccaria , M Bevan , R K Wilson , M de la Bastide , K Habermann , L Parnell , N Dedhia , L Gnoj , K Schutz , E Huang , L Spiegel , M Sehkon , J Murray , P Sheet , M Cordes , J Abu-Threideh , T Stoneking , J Kalicki , T Graves , G Harmon , J Edwards , P Latreille , L Courtney , J Cloud , A Abbott , K Scott , D Johnson , P Minx , D Bentley , B Fulton , N Miller , T Greco , K Kemp , J Kramer , L Fulton , E Mardis , M Dante , K Pepin , L Hillier , J Nelson , J Spieth , E Ryan , S Andrews , C Geisel , D Layman , H Du , J Ali , A Berghoff , K Jones , K Drone , M Cotton , C Joshu , B Antonoiu , M Zidanic , C Strong , H Sun , B Lamar , C Yordan , P Ma , J Zhong , R Preston , D Vil , M Shekher , A Matero , R Shah , I K Swaby , A O'Shaughnessy , M Rodriguez , J Hoffmann , S Till , S Granat , N Shohdy , A Hasegawa , A Hameed , M Lodhi , A Johnson , E Chen , M Marra , R Martienssen , W R McCombie	1999-12-16	AT4G22758, AT4G04972, AT4G04775, AT4G22305, AT4G39925, AT4G05475, AT4G15165, AT4G34419, AT4G26483, AT4G21534, AT4G19890, AT4G26485, AT4G01915, AT4G01985, AGL51, AT4G02405, AT4G02725, AT4G04925, AT4G10895, AT4G11211, AT4G11655, AT4G12735, AT4G13266, SCRL10, AT4G16015, AT4G16165, AT4G16380, AT4G19100, AT4G19910, AT4G19925, AT4G23515, AT4G23882, AT4G23895, AT4G24015, TPD1, AT4G25315, AT4G27415, AT4G28088, AT4G28405, AT4G32785, AT4G35430, AT4G36515, AT4G37235, AT4G25845, LCR2, AT4G10603, AT4G03505, AT4G18823, SCRL26, AT4G14272, AT4G14276, AT4G15248, AT4G14723, AT4G06688, LCR11, LCR34, AT4G06598, CYP71A28, AT4G22666, AT4G08028, AT4G04614, AT4G08875, AT4G08485, AT4G14819, LCR36, AT4G18501, AT4G11393, AT4G09647, LCR37, SCRL23, AT4G08039, AT4G14104, AT4G17713, AT4G17718, AT4G10613, AT4G08869, AT4G08867, AT4G08868, SCRL21, SCRL1, AT4G13968, PUP8, PUP7, AT4G18205, AT4G17100, AT4G16162, AT4G08267, AT4G01883, SCRL11, ARPC4, AT4G27745, AT4G00026, SCRL20, SCRL14, LCR13, AT4G02733, AT4G14305, LCR7, LCR15

Pubmed编号

文献信息

发表日期

相关基因

30992430

Primed histone demethylation regulates shoot regenerative competency.

Nat Commun Hiroya Ishihara , Kaoru Sugimoto , Paul T Tarr , Haruka Temman , Satoshi Kadokura , Yayoi Inui , Takuya Sakamoto , Taku Sasaki , Mitsuhiro Aida , Takamasa Suzuki , Soichi Inagaki , Kengo Morohashi , Motoaki Seki , Tetsuji Kakutani , Elliot M Meyerowitz , Sachihiro Matsunaga

2019-04-16

21873635

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.

Brief. Bioinformatics Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas

2011-09-01

10617198

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

Nature K Mayer , C SchÃ¼ller , R Wambutt , G Murphy , G Volckaert , T Pohl , A DÃ¼sterhÃ¶ft , W Stiekema , K D Entian , N Terryn , B Harris , W Ansorge , P Brandt , L Grivell , M Rieger , M Weichselgartner , V de Simone , B Obermaier , R Mache , M MÃ¼ller , M Kreis , M Delseny , P Puigdomenech , M Watson , T Schmidtheini , B Reichert , D Portatelle , M Perez-Alonso , M Boutry , I Bancroft , P Vos , J Hoheisel , W Zimmermann , H Wedler , P Ridley , S A Langham , B McCullagh , L Bilham , J Robben , J Van der Schueren , B Grymonprez , Y J Chuang , F Vandenbussche , M Braeken , I Weltjens , M Voet , I Bastiaens , R Aert , E Defoor , T Weitzenegger , G Bothe , U Ramsperger , H Hilbert , M Braun , E Holzer , A Brandt , S Peters , M van Staveren , W Dirske , P Mooijman , R Klein Lankhorst , M Rose , J Hauf , P KÃ¶tter , S Berneiser , S Hempel , M Feldpausch , S Lamberth , H Van den Daele , A De Keyser , C Buysshaert , J Gielen , R Villarroel , R De Clercq , M Van Montagu , J Rogers , A Cronin , M Quail , S Bray-Allen , L Clark , J Doggett , S Hall , M Kay , N Lennard , K McLay , R Mayes , A Pettett , M A Rajandream , M Lyne , V Benes , S Rechmann , D Borkova , H BlÃ¶cker , M Scharfe , M Grimm , T H LÃ¶hnert , S Dose , M de Haan , A Maarse , M SchÃ¤fer , S MÃ¼ller-Auer , C Gabel , M Fuchs , B Fartmann , K Granderath , D Dauner , A Herzl , S Neumann , A Argiriou , D Vitale , R Liguori , E Piravandi , O Massenet , F Quigley , G Clabauld , A MÃ¼ndlein , R Felber , S Schnabl , R Hiller , W Schmidt , A Lecharny , S Aubourg , F Chefdor , R Cooke , C Berger , A Montfort , E Casacuberta , T Gibbons , N Weber , M Vandenbol , M Bargues , J Terol , A Torres , A Perez-Perez , B Purnelle , E Bent , S Johnson , D Tacon , T Jesse , L Heijnen , S Schwarz , P Scholler , S Heber , P Francs , C Bielke , D Frishman , D Haase , K Lemcke , H W Mewes , S Stocker , P Zaccaria , M Bevan , R K Wilson , M de la Bastide , K Habermann , L Parnell , N Dedhia , L Gnoj , K Schutz , E Huang , L Spiegel , M Sehkon , J Murray , P Sheet , M Cordes , J Abu-Threideh , T Stoneking , J Kalicki , T Graves , G Harmon , J Edwards , P Latreille , L Courtney , J Cloud , A Abbott , K Scott , D Johnson , P Minx , D Bentley , B Fulton , N Miller , T Greco , K Kemp , J Kramer , L Fulton , E Mardis , M Dante , K Pepin , L Hillier , J Nelson , J Spieth , E Ryan , S Andrews , C Geisel , D Layman , H Du , J Ali , A Berghoff , K Jones , K Drone , M Cotton , C Joshu , B Antonoiu , M Zidanic , C Strong , H Sun , B Lamar , C Yordan , P Ma , J Zhong , R Preston , D Vil , M Shekher , A Matero , R Shah , I K Swaby , A O'Shaughnessy , M Rodriguez , J Hoffmann , S Till , S Granat , N Shohdy , A Hasegawa , A Hameed , M Lodhi , A Johnson , E Chen , M Marra , R Martienssen , W R McCombie

1999-12-16

AT4G22758, AT4G04972, AT4G04775, AT4G22305, AT4G39925, AT4G05475, AT4G15165, AT4G34419, AT4G26483, AT4G21534, AT4G19890, AT4G26485, AT4G01915, AT4G01985, AGL51, AT4G02405, AT4G02725, AT4G04925, AT4G10895, AT4G11211, AT4G11655, AT4G12735, AT4G13266, SCRL10, AT4G16015, AT4G16165, AT4G16380, AT4G19100, AT4G19910, AT4G19925, AT4G23515, AT4G23882, AT4G23895, AT4G24015, TPD1, AT4G25315, AT4G27415, AT4G28088, AT4G28405, AT4G32785, AT4G35430, AT4G36515, AT4G37235, AT4G25845, LCR2, AT4G10603, AT4G03505, AT4G18823, SCRL26, AT4G14272, AT4G14276, AT4G15248, AT4G14723, AT4G06688, LCR11, LCR34, AT4G06598, CYP71A28, AT4G22666, AT4G08028, AT4G04614, AT4G08875, AT4G08485, AT4G14819, LCR36, AT4G18501, AT4G11393, AT4G09647, LCR37, SCRL23, AT4G08039, AT4G14104, AT4G17713, AT4G17718, AT4G10613, AT4G08869, AT4G08867, AT4G08868, SCRL21, SCRL1, AT4G13968, PUP8, PUP7, AT4G18205, AT4G17100, AT4G16162, AT4G08267, AT4G01883, SCRL11, ARPC4, AT4G27745, AT4G00026, SCRL20, SCRL14, LCR13, AT4G02733, AT4G14305, LCR7, LCR15

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