Evolution of genes and genomes on the Drosophila phylogeny.

Nature     Drosophila 12 Genomes Consortium , Andrew G Clark , Michael B Eisen , Douglas R Smith , Casey M Bergman , Brian Oliver , Therese A Markow , Thomas C Kaufman , Manolis Kellis , William Gelbart , Venky N Iyer , Daniel A Pollard , Timothy B Sackton , Amanda M Larracuente , Nadia D Singh , Jose P Abad , Dawn N Abt , Boris Adryan , Montserrat Aguade , Hiroshi Akashi , Wyatt W Anderson , Charles F Aquadro , David H Ardell , Roman Arguello , Carlo G Artieri , Daniel A Barbash , Daniel Barker , Paolo Barsanti , Phil Batterham , Serafim Batzoglou , Dave Begun , Arjun Bhutkar , Enrico Blanco , Stephanie A Bosak , Robert K Bradley , Adrianne D Brand , Michael R Brent , Angela N Brooks , Randall H Brown , Roger K Butlin , Corrado Caggese , Brian R Calvi , A Bernardo de Carvalho , Anat Caspi , Sergio Castrezana , Susan E Celniker , Jean L Chang , Charles Chapple , Sourav Chatterji , Asif Chinwalla , Alberto Civetta , Sandra W Clifton , Josep M Comeron , James C Costello , Jerry A Coyne , Jennifer Daub , Robert G David , Arthur L Delcher , Kim Delehaunty , Chuong B Do , Heather Ebling , Kevin Edwards , Thomas Eickbush , Jay D Evans , Alan Filipski , Sven Findeiss , Eva Freyhult , Lucinda Fulton , Robert Fulton , Ana C L Garcia , Anastasia Gardiner , David A Garfield , Barry E Garvin , Greg Gibson , Don Gilbert , Sante Gnerre , Jennifer Godfrey , Robert Good , Valer Gotea , Brenton Gravely , Anthony J Greenberg , Sam Griffiths-Jones , Samuel Gross , Roderic Guigo , Erik A Gustafson , Wilfried Haerty , Matthew W Hahn , Daniel L Halligan , Aaron L Halpern , Gillian M Halter , Mira V Han , Andreas Heger , LaDeana Hillier , Angie S Hinrichs , Ian Holmes , Roger A Hoskins , Melissa J Hubisz , Dan Hultmark , Melanie A Huntley , David B Jaffe , Santosh Jagadeeshan , William R Jeck , Justin Johnson , Corbin D Jones , William C Jordan , Gary H Karpen , Eiko Kataoka , Peter D Keightley , Pouya Kheradpour , Ewen F Kirkness , Leonardo B Koerich , Karsten Kristiansen , Dave Kudrna , Rob J Kulathinal , Sudhir Kumar , Roberta Kwok , Eric Lander , Charles H Langley , Richard Lapoint , Brian P Lazzaro , So-Jeong Lee , Lisa Levesque , Ruiqiang Li , Chiao-Feng Lin , Michael F Lin , Kerstin Lindblad-Toh , Ana Llopart , Manyuan Long , Lloyd Low , Elena Lozovsky , Jian Lu , Meizhong Luo , Carlos A Machado , Wojciech Makalowski , Mar Marzo , Muneo Matsuda , Luciano Matzkin , Bryant McAllister , Carolyn S McBride , Brendan McKernan , Kevin McKernan , Maria Mendez-Lago , Patrick Minx , Michael U Mollenhauer , Kristi Montooth , Stephen M Mount , Xu Mu , Eugene Myers , Barbara Negre , Stuart Newfeld , Rasmus Nielsen , Mohamed A F Noor , Patrick O'Grady , Lior Pachter , Montserrat Papaceit , Matthew J Parisi , Michael Parisi , Leopold Parts , Jakob S Pedersen , Graziano Pesole , Adam M Phillippy , Chris P Ponting , Mihai Pop , Damiano Porcelli , Jeffrey R Powell , Sonja Prohaska , Kim Pruitt , Marta Puig , Hadi Quesneville , Kristipati Ravi Ram , David Rand , Matthew D Rasmussen 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Grabherr , Michael Kleber , Evan Mauceli , Iain MacCallum

Maternal expression increases the rate of bicoid evolution by relaxing selective constraint.

Genetica     Jeffery P Demuth , Michael J Wade

Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid.

PLoS Genet.     Michael S Barker , Jeffery P Demuth , Michael J Wade

DNA sequence variation at a duplicated gene: excess of replacement polymorphism and extensive haplotype structure in the Drosophila melanogaster bicoid region.

Mol. Biol. Evol.     John F Baines , Ying Chen , Aparup Das , Wolfgang Stephan

Selection intensity against deleterious mutations in RNA secondary structures and rate of compensatory nucleotide substitutions.

Genetics     H Innan , W Stephan

Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

Genetics     H Akashi , S W Schaeffer

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster.

Genetics     H Akashi

Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

Genetics     H Akashi

bicoid mRNA localization signal: phylogenetic conservation of function and RNA secondary structure.

Development     P M MacDonald