Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression.

PLoS Genet     Mathilde Paris , Tommy Kaplan , Xiao Yong Li , Jacqueline E Villalta , Susan E Lott , Michael B Eisen

A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila.

PLoS Genet.     Charless C Fowlkes , Kelly B Eckenrode , Meghan D Bragdon , Miriah Meyer , Zeba Wunderlich , Lisa Simirenko , Cris L Luengo Hendriks , Soile V E Keränen , Clara Henriquez , David W Knowles , Mark D Biggin , Michael B Eisen , Angela H DePace

Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites.

BMC Evol. Biol.     Alan M Moses

Evolution of genes and genomes on the Drosophila phylogeny.

Nature     Drosophila 12 Genomes Consortium , Andrew G Clark , Michael B Eisen , Douglas R Smith , Casey M Bergman , Brian Oliver , Therese A Markow , Thomas C Kaufman , Manolis Kellis , William Gelbart , Venky N Iyer , Daniel A Pollard , Timothy B Sackton , Amanda M Larracuente , Nadia D Singh , Jose P Abad , Dawn N Abt , Boris Adryan , Montserrat Aguade , Hiroshi Akashi , Wyatt W Anderson , Charles F Aquadro , David H Ardell , Roman Arguello , Carlo G Artieri , Daniel A Barbash , Daniel Barker , Paolo Barsanti , Phil Batterham , Serafim Batzoglou , Dave Begun , Arjun Bhutkar , Enrico Blanco , Stephanie A Bosak , Robert K Bradley , Adrianne D Brand , Michael R Brent , Angela N Brooks , Randall H Brown , Roger K Butlin , Corrado Caggese , Brian R Calvi , A Bernardo de Carvalho , Anat Caspi , Sergio Castrezana , Susan E Celniker , Jean L Chang , Charles Chapple , Sourav Chatterji , Asif Chinwalla , Alberto Civetta , Sandra W Clifton , Josep M Comeron , James C Costello , Jerry A Coyne , 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Functional evolution of a cis-regulatory module.

PLoS Biol.     Michael Z Ludwig , Arnar Palsson , Elena Alekseeva , Casey M Bergman , Janaki Nathan , Martin Kreitman

Evolution of development in closely related species of flies and worms.

Nat. Rev. Genet.     Pat Simpson

Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms.

Development     Luiz Paulo Moura Andrioli , Vikram Vasisht , Ekaterina Theodosopoulou , Adam Oberstein , Stephen Small

Evidence for stabilizing selection in a eukaryotic enhancer element.

Nature     M Z Ludwig , C Bergman , N H Patel , M Kreitman

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

Development     M Z Ludwig , N H Patel , M Kreitman