Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

BMC Genomics     Jeremy Pasquier , Cédric Cabau , Thaovi Nguyen , Elodie Jouanno , Dany Severac , Ingo Braasch , Laurent Journot , Pierre Pontarotti , Christophe Klopp , John H Postlethwait , Yann Guiguen , Julien Bobe

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.

Brief. Bioinformatics     Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition.

Genome Res     HÃ¥vard Aanes , Cecilia L Winata , Chi Ho Lin , Jieqi P Chen , Kandhadayar G Srinivasan , Serene G P Lee , Adrian Y M Lim , Hajira Shreen Hajan , Philippe Collas , Guillaume Bourque , Zhiyuan Gong , Vladimir Korzh , Peter Aleström , Sinnakaruppan Mathavan

Bucky ball functions in Balbiani body assembly and animal-vegetal polarity in the oocyte and follicle cell layer in zebrafish.

Dev. Biol.     Florence L Marlow , Mary C Mullins

Identification and characterization of evolutionarily conserved pufferfish, zebrafish, and frog orthologs of GASZ.

Biol. Reprod.     Wei Yan , Lang Ma , Carolyn A Zilinski , Martin M Matzuk

Comparative analyses of multi-species sequences from targeted genomic regions.

Nature     J W Thomas , J W Touchman , R W Blakesley , G G Bouffard , S M Beckstrom-Sternberg , E H Margulies , M Blanchette , A C Siepel , P J Thomas , J C McDowell , B Maskeri , N F Hansen , M S Schwartz , R J Weber , W J Kent , D Karolchik , T C Bruen , R Bevan , D J Cutler , S Schwartz , L Elnitski , J R Idol , A B Prasad , S-Q Lee-Lin , V V B Maduro , T J Summers , M E Portnoy , N L Dietrich , N Akhter , K Ayele , B Benjamin , K Cariaga , C P Brinkley , S Y Brooks , S Granite , X Guan , J Gupta , P Haghighi , S-L Ho , M C Huang , E Karlins , P L Laric , R Legaspi , M J Lim , Q L Maduro , C A Masiello , S D Mastrian , J C McCloskey , R Pearson , S Stantripop , E E Tiongson , J T Tran , C Tsurgeon , J L Vogt , M A Walker , K D Wetherby , L S Wiggins , A C Young , L-H Zhang , K Osoegawa , B Zhu , B Zhao , C L Shu , P J De Jong , C E Lawrence , A F Smit , A Chakravarti , D Haussler , P Green , W Miller , E D Green

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc. Natl. Acad. Sci. U.S.A.     Robert L Strausberg , Elise A Feingold , Lynette H Grouse , Jeffery G Derge , Richard D Klausner , Francis S Collins , Lukas Wagner , Carolyn M Shenmen , Gregory D Schuler , Stephen F Altschul , Barry Zeeberg , Kenneth H Buetow , Carl F Schaefer , Narayan K Bhat , Ralph F Hopkins , Heather Jordan , Troy Moore , Steve I Max , Jun Wang , Florence Hsieh , Luda Diatchenko , Kate Marusina , Andrew A Farmer , Gerald M Rubin , Ling Hong , Mark Stapleton , M Bento Soares , Maria F Bonaldo , Tom L Casavant , Todd E Scheetz , Michael J Brownstein , Ted B Usdin , Shiraki Toshiyuki , Piero Carninci , Christa Prange , Sam S Raha , Naomi A Loquellano , Garrick J Peters , Rick D Abramson , Sara J Mullahy , Stephanie A Bosak , Paul J McEwan , Kevin J McKernan , Joel A Malek , Preethi H Gunaratne , Stephen Richards , Kim C Worley , Sarah Hale , Angela M Garcia , Laura J Gay , Stephen W Hulyk , Debbie K Villalon , Donna M Muzny , Erica J Sodergren , Xiuhua Lu , Richard A Gibbs , Jessica Fahey , Erin Helton , Mark Ketteman , Anuradha Madan , Stephanie Rodrigues , Amy Sanchez , Michelle Whiting , Anup Madan , Alice C Young , Yuriy Shevchenko , Gerard G Bouffard , Robert W Blakesley , Jeffrey W Touchman , Eric D Green , Mark C Dickson , Alex C Rodriguez , Jane Grimwood , Jeremy Schmutz , Richard M Myers , Yaron S N Butterfield , Martin I Krzywinski , Ursula Skalska , Duane E Smailus , Angelique Schnerch , Jacqueline E Schein , Steven J M Jones , Marco A Marra , Mammalian Gene Collection Program Team