PDF1A - polypeptide deformylase-BMKCloudï½ç¾è¿å®¢äº

544225 PDF1A

基因描述

Type	Description
Definition	polypeptide deformylase

名称对应

Type	IDs
Synonymous	PDF 1A
Gene	UniProtKB-ID: DEF1A_SOLLC UniprotKB: Q9FUZ0 UniParc: UPI0000129143 EMBL: AF271258 EnsemblGenome: Solyc07g015860.3 KO: sly:544225
Nucleutide sequences	EMBL-CDS: AAG33981.1 EnsemblGenome_TRS: Solyc07g015860.3.1
Protein sequencees	EnsemblGenome_PRO: Solyc07g015860.3.1 RefSeq: NP_001303906.1, XP_025887604.1, XP_025887605.1, NP_001234703.1
Others	UniRef100: UniRef100_Q9FUZ0 UniRef90: UniRef90_Q9FUZ0 UniRef50: UniRef50_Q9FV53 UniGene: Les.2897

全选

{{proteinIndex+1}}	mRNA	Protein	UniprotKB	Description
Refseq	{{protein.nucleotideVersion}} Ensembl: {{protein.nucleotideEnsembl}}	{{protein.proteinVersion}} Ensembl: {{protein.proteinEnsembl}}	{{uniprot}}	Definition: {{{protein.definition}}} Transcript Veriant:{{protein.transcriptVeriant}} Status: {{protein.status}}
Location	( {{protein.positionStart}}..{{protein.positionEnd}} )
Conserved domain	Region: {{conservedDomain.region == '' \|\| conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' \|\| conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' \|\| conservedDomain.family == null ? "-": conservedDomain.family}} CDD:	{{conservedDomain.comments == '' \|\| conservedDomain.comments == null ? "-" : conservedDomain.comments }}	Region: {{conservedDomain.region == '' \|\| conservedDomain.region == null ? "-": conservedDomain.region}} GFID: {{conservedDomain.gfid == '' \|\| conservedDomain.gfid == null ? "-": conservedDomain.gfid}} Family: {{conservedDomain.family == '' \|\| conservedDomain.family == null ? "-": conservedDomain.family}} CDD:	{{conservedDomain.comments == '' \|\| conservedDomain.comments == null ? "-" : conservedDomain.comments }}

mRNA

Protein

UniprotKB

Description

Refseq

Ensembl: {{protein.nucleotideEnsembl}}

Ensembl: {{protein.proteinEnsembl}}

Definition: {{{protein.definition}}}

Transcript Veriant:{{protein.transcriptVeriant}}

Status: {{protein.status}}

Location

( {{protein.positionStart}}..{{protein.positionEnd}} )

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Pubmed编号	文献信息	发表日期	相关基因
20350329	Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. BMC Genomics Koh Aoki , Kentaro Yano , Ayako Suzuki , Shingo Kawamura , Nozomu Sakurai , Kunihiro Suda , Atsushi Kurabayashi , Tatsuya Suzuki , Taneaki Tsugane , Manabu Watanabe , Kazuhide Ooga , Maiko Torii , Takanori Narita , Tadasu Shin-I , Yuji Kohara , Naoki Yamamoto , Hideki Takahashi , Yuichiro Watanabe , Mayumi Egusa , Motoichiro Kodama , Yuki Ichinose , Mari Kikuchi , Sumire Fukushima , Akiko Okabe , Tsutomu Arie , Yuko Sato , Katsumi Yazawa , Shinobu Satoh , Toshikazu Omura , Hiroshi Ezura , Daisuke Shibata	2010-01-01	CYP85A1, TFIIIA, GRAS4, GRAS6, GRAS10, MBF1a, SRK2C, LOC100037511, EOL1, matriochka, LOC100037732, PHOT1, tbn1, WRKYIId-1, LOC100134875, LOC100134876, SO, LOC100134879, SAMDC, SGS3, MDC, PAR2, ADH, IPI, 5PT4, HSP70, DRM5, LOC100136876, FIE, SD1, CYP707A1, CAS1, LOC100147720, GAD2, SSR1, SSR2, LOC100191110, LOC100191111, LOC100191113, LOC100191114, LOC100191116, LOC100191117, LOC100191118, LOC100191121, TPK1b, LOC100191127, LOC100191128, LOC100191129, GGH1, GGH2, rps16, LOC100191138, SAP1, LOC100301919, LOC100301920, LOC100301921, NAM1, SRG1, CYC1, UBC3, LOC100301935, loxF, MST2, hb-1, LOC100301944, LOC100301981, UBC, GME2, MIOX, LOC100316881, CD2, LOC100316892, PP2C-1, PP2C-2, IMPCHase, LOC100316899, LOC100316901, GME1, PIN4, LOC100529103, LOC100529106, LLP, MAPK5, AP2b, TCP11, CyP, Glb1, PIIGLB1, CHRD, LOC100736441, CYP51, LOC100736452, PAT, LOC100736465, SERK3A, LOC100736468, LOC100736469, LOC100736470, MAPK6
15975739	Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Gene Naoki Yamamoto , Taneaki Tsugane , Manabu Watanabe , Kentaro Yano , Fumi Maeda , Chikara Kuwata , Moez Torki , Yusuke Ban , Shigeo Nishimura , Daisuke Shibata	2005-08-15	LOC100301935, SlscADH1, IAA8, LOC101243846, LOC101243943, LOC101244001, LOC101244055, LOC101244297, LOC101244336, LOC101244341, LOC101244368, LOC101244370, LOC101244529, LOC101245252, LOC101248222, LOC101249451, vicilin, LOC101250507, LOC101251127, LOC101252294, LOC101253371, SP5G, USP, SlCaM3, OEE1, GBSS1, HSP90, LOC101262875, LOC101265536, LOC104646135, SBT1, LOC544142, LeCCD1B
11060042	Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms. EMBO J. C Giglione , A Serero , M Pierre , B Boisson , T Meinnel	2000-11-01	MAP2A, MAP1A, MAP2B, PDF1A, PDF1B, PDF1A, CG31373, und, CG5188, CG31278, CG13630, PDF

Pubmed编号

文献信息

发表日期

相关基因

20350329

Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics.

BMC Genomics Koh Aoki , Kentaro Yano , Ayako Suzuki , Shingo Kawamura , Nozomu Sakurai , Kunihiro Suda , Atsushi Kurabayashi , Tatsuya Suzuki , Taneaki Tsugane , Manabu Watanabe , Kazuhide Ooga , Maiko Torii , Takanori Narita , Tadasu Shin-I , Yuji Kohara , Naoki Yamamoto , Hideki Takahashi , Yuichiro Watanabe , Mayumi Egusa , Motoichiro Kodama , Yuki Ichinose , Mari Kikuchi , Sumire Fukushima , Akiko Okabe , Tsutomu Arie , Yuko Sato , Katsumi Yazawa , Shinobu Satoh , Toshikazu Omura , Hiroshi Ezura , Daisuke Shibata

2010-01-01

CYP85A1, TFIIIA, GRAS4, GRAS6, GRAS10, MBF1a, SRK2C, LOC100037511, EOL1, matriochka, LOC100037732, PHOT1, tbn1, WRKYIId-1, LOC100134875, LOC100134876, SO, LOC100134879, SAMDC, SGS3, MDC, PAR2, ADH, IPI, 5PT4, HSP70, DRM5, LOC100136876, FIE, SD1, CYP707A1, CAS1, LOC100147720, GAD2, SSR1, SSR2, LOC100191110, LOC100191111, LOC100191113, LOC100191114, LOC100191116, LOC100191117, LOC100191118, LOC100191121, TPK1b, LOC100191127, LOC100191128, LOC100191129, GGH1, GGH2, rps16, LOC100191138, SAP1, LOC100301919, LOC100301920, LOC100301921, NAM1, SRG1, CYC1, UBC3, LOC100301935, loxF, MST2, hb-1, LOC100301944, LOC100301981, UBC, GME2, MIOX, LOC100316881, CD2, LOC100316892, PP2C-1, PP2C-2, IMPCHase, LOC100316899, LOC100316901, GME1, PIN4, LOC100529103, LOC100529106, LLP, MAPK5, AP2b, TCP11, CyP, Glb1, PIIGLB1, CHRD, LOC100736441, CYP51, LOC100736452, PAT, LOC100736465, SERK3A, LOC100736468, LOC100736469, LOC100736470, MAPK6

15975739

Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars.

Gene Naoki Yamamoto , Taneaki Tsugane , Manabu Watanabe , Kentaro Yano , Fumi Maeda , Chikara Kuwata , Moez Torki , Yusuke Ban , Shigeo Nishimura , Daisuke Shibata

2005-08-15

LOC100301935, SlscADH1, IAA8, LOC101243846, LOC101243943, LOC101244001, LOC101244055, LOC101244297, LOC101244336, LOC101244341, LOC101244368, LOC101244370, LOC101244529, LOC101245252, LOC101248222, LOC101249451, vicilin, LOC101250507, LOC101251127, LOC101252294, LOC101253371, SP5G, USP, SlCaM3, OEE1, GBSS1, HSP90, LOC101262875, LOC101265536, LOC104646135, SBT1, LOC544142, LeCCD1B

11060042

Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms.

EMBO J. C Giglione , A Serero , M Pierre , B Boisson , T Meinnel

2000-11-01

MAP2A, MAP1A, MAP2B, PDF1A, PDF1B, PDF1A, CG31373, und, CG5188, CG31278, CG13630, PDF

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