Regeneration Rosetta: An Interactive Web Application To Explore Regeneration-Associated Gene Expression and Chromatin Accessibility.

G3 (Bethesda)     Andrea Rau , Sumona P Dhara , Ava J Udvadia , Paul L Auer

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

BMC Genomics     Jeremy Pasquier , Cédric Cabau , Thaovi Nguyen , Elodie Jouanno , Dany Severac , Ingo Braasch , Laurent Journot , Pierre Pontarotti , Christophe Klopp , John H Postlethwait , Yann Guiguen , Julien Bobe

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation.

Nat. Genet.     Yaping Wang , Ying Lu , Yong Zhang , Zemin Ning , Yan Li , Qiang Zhao , Hengyun Lu , Rong Huang , Xiaoqin Xia , Qi Feng , Xufang Liang , Kunyan Liu , Lei Zhang , Tingting Lu , Tao Huang , Danlin Fan , Qijun Weng , Chuanrang Zhu , Yiqi Lu , Wenjun Li , Ziruo Wen , Congcong Zhou , Qilin Tian , Xiaojun Kang , Mijuan Shi , Wanting Zhang , Songhun Jang , Fukuan Du , Shan He , Lanjie Liao , Yongming Li , Bin Gui , Huihui He , Zhen Ning , Cheng Yang , Libo He , Lifei Luo , Rui Yang , Qiong Luo , Xiaochun Liu , Shuisheng Li , Wen Huang , Ling Xiao , Haoran Lin , Bin Han , Zuoyan Zhu

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.

Brief. Bioinformatics     Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas

Transcriptome analysis of Traf6 function in the innate immune response of zebrafish embryos.

Mol. Immunol.     Oliver W Stockhammer , Han Rauwerda , Floyd R Wittink , Timo M Breit , Annemarie H Meijer , Herman P Spaink

A systematic approach to identify functional motifs within vertebrate developmental enhancers.

Dev Biol     Qiang Li , Deborah Ritter , Nan Yang , Zhiqiang Dong , Hao Li , Jeffrey H Chuang , Su Guo

Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain.

PLoS One     Rajini Sreenivasan , Minnie Cai , Richard Bartfai , Xingang Wang , Alan Christoffels , Laszlo Orban

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc. Natl. Acad. Sci. U.S.A.     Robert L Strausberg , Elise A Feingold , Lynette H Grouse , Jeffery G Derge , Richard D Klausner , Francis S Collins , Lukas Wagner , Carolyn M Shenmen , Gregory D Schuler , Stephen F Altschul , Barry Zeeberg , Kenneth H Buetow , Carl F Schaefer , Narayan K Bhat , Ralph F Hopkins , Heather Jordan , Troy Moore , Steve I Max , Jun Wang , Florence Hsieh , Luda Diatchenko , Kate Marusina , Andrew A Farmer , Gerald M Rubin , Ling Hong , Mark Stapleton , M Bento Soares , Maria F Bonaldo , Tom L Casavant , Todd E Scheetz , Michael J Brownstein , Ted B Usdin , Shiraki Toshiyuki , Piero Carninci , Christa Prange , Sam S Raha , Naomi A Loquellano , Garrick J Peters , Rick D Abramson , Sara J Mullahy , Stephanie A Bosak , Paul J McEwan , Kevin J McKernan , Joel A Malek , Preethi H Gunaratne , Stephen Richards , Kim C Worley , Sarah Hale , Angela M Garcia , Laura J Gay , Stephen W Hulyk , Debbie K Villalon , Donna M Muzny , Erica J Sodergren , Xiuhua Lu , Richard A Gibbs , Jessica Fahey , Erin Helton , Mark Ketteman , Anuradha Madan , Stephanie Rodrigues , Amy Sanchez , Michelle Whiting , Anup Madan , Alice C Young , Yuriy Shevchenko , Gerard G Bouffard , Robert W Blakesley , Jeffrey W Touchman , Eric D Green , Mark C Dickson , Alex C Rodriguez , Jane Grimwood , Jeremy Schmutz , Richard M Myers , Yaron S N Butterfield , Martin I Krzywinski , Ursula Skalska , Duane E Smailus , Angelique Schnerch , Jacqueline E Schein , Steven J M Jones , Marco A Marra , Mammalian Gene Collection Program Team