Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei.

Mol Cell Proteomics     Domenico Fasci , Hugo van Ingen , Richard A Scheltema , Albert J R Heck

VIRMA mediates preferential m⁶A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation.

Cell Discov     Yanan Yue , Jun Liu , Xiaolong Cui , Jie Cao , Guanzheng Luo , Zezhou Zhang , Tao Cheng , Minsong Gao , Xiao Shu , Honghui Ma , Fengqin Wang , Xinxia Wang , Bin Shen , Yizhen Wang , Xinhua Feng , Chuan He , Jianzhao Liu

Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in β-Catenin-Active Cancers.

Cell Syst     Joseph Rosenbluh , Johnathan Mercer , Yashaswi Shrestha , Rachel Oliver , Pablo Tamayo , John G Doench , Itay Tirosh , Federica Piccioni , Ella Hartenian , Heiko Horn , Lola Fagbami , David E Root , Jacob Jaffe , Kasper Lage , Jesse S Boehm , William C Hahn

Protein interaction screening for the ankyrin repeats and suppressor of cytokine signaling (SOCS) box (ASB) family identify Asb11 as a novel endoplasmic reticulum resident ubiquitin ligase.

J Biol Chem     Christina Aaen Andresen , Stine Smedegaard , Kathrine Beck Sylvestersen , Charlotte Svensson , Diego Iglesias-Gato , Giuseppe Cazzamali , Tine Kragh Nielsen , Michael Lund Nielsen , Amilcar Flores-Morales

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.

Brief. Bioinformatics     Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.

Genome Res.     Kouichi Kimura , Ai Wakamatsu , Yutaka Suzuki , Toshio Ota , Tetsuo Nishikawa , Riu Yamashita , Jun-ichi Yamamoto , Mitsuo Sekine , Katsuki Tsuritani , Hiroyuki Wakaguri , Shizuko Ishii , Tomoyasu Sugiyama , Kaoru Saito , Yuko Isono , Ryotaro Irie , Norihiro Kushida , Takahiro Yoneyama , Rie Otsuka , Katsuhiro Kanda , Takahide Yokoi , Hiroshi Kondo , Masako Wagatsuma , Katsuji Murakawa , Shinichi Ishida , Tadashi Ishibashi , Asako Takahashi-Fujii , Tomoo Tanase , Keiichi Nagai , Hisashi Kikuchi , Kenta Nakai , Takao Isogai , Sumio Sugano

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Nature     Ladeana W Hillier , Tina A Graves , Robert S Fulton , Lucinda A Fulton , Kymberlie H Pepin , Patrick Minx , Caryn Wagner-McPherson , Dan Layman , Kristine Wylie , Mandeep Sekhon , Michael C Becker , Ginger A Fewell , Kimberly D Delehaunty , Tracie L Miner , William E Nash , Colin Kremitzki , Lachlan Oddy , Hui Du , Hui Sun , Holland Bradshaw-Cordum , Johar Ali , Jason Carter , Matt Cordes , Anthony Harris , Amber Isak , Andrew van Brunt , Christine Nguyen , Feiyu Du , Laura Courtney , Joelle Kalicki , Philip Ozersky , Scott Abbott , Jon Armstrong , Edward A Belter , Lauren Caruso , Maria Cedroni , Marc Cotton , Teresa Davidson , Anu Desai , Glendoria Elliott , Thomas Erb , Catrina Fronick , Tony Gaige , William Haakenson , Krista Haglund , Andrea Holmes , Richard Harkins , Kyung Kim , Scott S Kruchowski , Cynthia Madsen Strong , Neenu Grewal , Ernest Goyea , Shunfang Hou , Andrew Levy , Scott Martinka , Kelly Mead , Michael D McLellan , Rick Meyer , Jennifer Randall-Maher , Chad Tomlinson , Sara Dauphin-Kohlberg , Amy Kozlowicz-Reilly , Neha Shah , Sharhonda Swearengen-Shahid , Jacqueline Snider , Joseph T Strong , Johanna Thompson , Martin Yoakum , Shawn Leonard , Charlene Pearman , Lee Trani , Maxim Radionenko , Jason E Waligorski , Chunyan Wang , Susan M Rock , Aye-Mon Tin-Wollam , Rachel Maupin , Phil Latreille , Michael C Wendl , Shiaw-Pyng Yang , Craig Pohl , John W Wallis , John Spieth , Tamberlyn A Bieri , Nicolas Berkowicz , Joanne O Nelson , John Osborne , Li Ding , Rekha Meyer , Aniko Sabo , Yoram Shotland , Prashant Sinha , Patricia E Wohldmann , Lisa L Cook , Matthew T Hickenbotham , James Eldred , Donald Williams , Thomas A Jones , Xinwei She , Francesca D Ciccarelli , Elisa Izaurralde , James Taylor , Jeremy Schmutz , Richard M Myers , David R Cox , Xiaoqiu Huang , John D McPherson , Elaine R Mardis , Sandra W Clifton , Wesley C Warren , Asif T Chinwalla , Sean R Eddy , Marco A Marra , Ivan Ovcharenko , Terrence S Furey , Webb Miller , Evan E Eichler , Peer Bork , Mikita Suyama , David Torrents , Robert H Waterston , Richard K Wilson

Complete sequencing and characterization of 21,243 full-length human cDNAs.

Nat. Genet.     Toshio Ota , Yutaka Suzuki , Tetsuo Nishikawa , Tetsuji Otsuki , Tomoyasu Sugiyama , Ryotaro Irie , Ai Wakamatsu , Koji Hayashi , Hiroyuki Sato , Keiichi Nagai , Kouichi Kimura , Hiroshi Makita , Mitsuo Sekine , Masaya Obayashi , Tatsunari Nishi , Toshikazu Shibahara , Toshihiro Tanaka , Shizuko Ishii , Jun-ichi Yamamoto , Kaoru Saito , Yuri Kawai , Yuko Isono , Yoshitaka Nakamura , Kenji Nagahari , Katsuhiko Murakami , Tomohiro Yasuda , Takao Iwayanagi , Masako Wagatsuma , Akiko Shiratori , Hiroaki Sudo , Takehiko Hosoiri , Yoshiko Kaku , Hiroyo Kodaira , Hiroshi Kondo , Masanori Sugawara , Makiko Takahashi , Katsuhiro Kanda , Takahide Yokoi , Takako Furuya , Emiko Kikkawa , Yuhi Omura , Kumi Abe , Kumiko Kamihara , Naoko Katsuta , Kazuomi Sato , Machiko Tanikawa , Makoto Yamazaki , Ken Ninomiya , Tadashi Ishibashi , Hiromichi Yamashita , Katsuji Murakawa , Kiyoshi Fujimori , Hiroyuki Tanai , Manabu Kimata , Motoji Watanabe , Susumu Hiraoka , Yoshiyuki Chiba , Shinichi Ishida , Yukio Ono , Sumiyo Takiguchi , Susumu Watanabe , Makoto Yosida , Tomoko Hotuta , Junko Kusano , Keiichi Kanehori , Asako Takahashi-Fujii , Hiroto Hara , Tomo-o Tanase , Yoshiko Nomura , Sakae Togiya , Fukuyo Komai , Reiko Hara , Kazuha Takeuchi , Miho Arita , Nobuyuki Imose , Kaoru Musashino , Hisatsugu Yuuki , Atsushi Oshima , Naokazu Sasaki , Satoshi Aotsuka , Yoko Yoshikawa , Hiroshi Matsunawa , Tatsuo Ichihara , Namiko Shiohata , Sanae Sano , Shogo Moriya , Hiroko Momiyama , Noriko Satoh , Sachiko Takami , Yuko Terashima , Osamu Suzuki , Satoshi Nakagawa , Akihiro Senoh , Hiroshi Mizoguchi , Yoshihiro Goto , Fumio Shimizu , Hirokazu Wakebe , Haretsugu Hishigaki , Takeshi Watanabe , Akio Sugiyama , Makoto Takemoto , Bunsei Kawakami , Masaaki Yamazaki , Koji Watanabe , Ayako Kumagai , Shoko Itakura , Yasuhito Fukuzumi , Yoshifumi Fujimori , Megumi Komiyama , Hiroyuki Tashiro , Akira Tanigami , Tsutomu Fujiwara , Toshihide Ono , Katsue Yamada , Yuka Fujii , Kouichi Ozaki , Maasa Hirao , Yoshihiro Ohmori , Ayako Kawabata , Takeshi Hikiji , Naoko Kobatake , Hiromi Inagaki , Yasuko Ikema , Sachiko Okamoto , Rie Okitani , Takuma Kawakami , Saori Noguchi , Tomoko Itoh , Keiko Shigeta , Tadashi Senba , Kyoka Matsumura , Yoshie Nakajima , Takae Mizuno , Misato Morinaga , Masahide Sasaki , Takushi Togashi , Masaaki Oyama , Hiroko Hata , Manabu Watanabe , Takami Komatsu , Junko Mizushima-Sugano , Tadashi Satoh , Yuko Shirai , Yukiko Takahashi , Kiyomi Nakagawa , Koji Okumura , Takahiro Nagase , Nobuo Nomura , Hisashi Kikuchi , Yasuhiko Masuho , Riu Yamashita , Kenta Nakai , Tetsushi Yada , Yusuke Nakamura , Osamu Ohara , Takao Isogai , Sumio Sugano

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc. Natl. Acad. Sci. U.S.A.     Robert L Strausberg , Elise A Feingold , Lynette H Grouse , Jeffery G Derge , Richard D Klausner , Francis S Collins , Lukas Wagner , Carolyn M Shenmen , Gregory D Schuler , Stephen F Altschul , Barry Zeeberg , Kenneth H Buetow , Carl F Schaefer , Narayan K Bhat , Ralph F Hopkins , Heather Jordan , Troy Moore , Steve I Max , Jun Wang , Florence Hsieh , Luda Diatchenko , Kate Marusina , Andrew A Farmer , Gerald M Rubin , Ling Hong , Mark Stapleton , M Bento Soares , Maria F Bonaldo , Tom L Casavant , Todd E Scheetz , Michael J Brownstein , Ted B Usdin , Shiraki Toshiyuki , Piero Carninci , Christa Prange , Sam S Raha , Naomi A Loquellano , Garrick J Peters , Rick D Abramson , Sara J Mullahy , Stephanie A Bosak , Paul J McEwan , Kevin J McKernan , Joel A Malek , Preethi H Gunaratne , Stephen Richards , Kim C Worley , Sarah Hale , Angela M Garcia , Laura J Gay , Stephen W Hulyk , Debbie K Villalon , Donna M Muzny , Erica J Sodergren , Xiuhua Lu , Richard A Gibbs , Jessica Fahey , Erin Helton , Mark Ketteman , Anuradha Madan , Stephanie Rodrigues , Amy Sanchez , Michelle Whiting , Anup Madan , Alice C Young , Yuriy Shevchenko , Gerard G Bouffard , Robert W Blakesley , Jeffrey W Touchman , Eric D Green , Mark C Dickson , Alex C Rodriguez , Jane Grimwood , Jeremy Schmutz , Richard M Myers , Yaron S N Butterfield , Martin I Krzywinski , Ursula Skalska , Duane E Smailus , Angelique Schnerch , Jacqueline E Schein , Steven J M Jones , Marco A Marra , Mammalian Gene Collection Program Team

Normalization and subtraction: two approaches to facilitate gene discovery.

Genome Res.     M F Bonaldo , G Lennon , M B Soares