Impact of cytosine methylation on DNA binding specificities of human transcription factors.

Science     Yimeng Yin , Ekaterina Morgunova , Arttu Jolma , Eevi Kaasinen , Biswajyoti Sahu , Syed Khund-Sayeed , Pratyush K Das , Teemu Kivioja , Kashyap Dave , Fan Zhong , Kazuhiro R Nitta , Minna Taipale , Alexander Popov , Paul A Ginno , Silvia Domcke , Jian Yan , Dirk Schübeler , Charles Vinson , Jussi Taipale

The Transcription Factor p8 Regulates Autophagy in Response to Palmitic Acid Stress via a Mammalian Target of Rapamycin (mTOR)-independent Signaling Pathway.

J Biol Chem     Sheng-Nan Jia , Cheng Lin , Dian-Fu Chen , An-Qi Li , Li Dai , Li Zhang , Ling-Ling Zhao , Jin-Shu Yang , Fan Yang , Wei-Jun Yang

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.

Nat Genet     Rosalind A Eeles , Ali Amin Al Olama , Sara Benlloch , Edward J Saunders , Daniel A Leongamornlert , Malgorzata Tymrakiewicz , Maya Ghoussaini , Craig Luccarini , Joe Dennis , Sarah Jugurnauth-Little , Tokhir Dadaev , David E Neal , Freddie C Hamdy , Jenny L Donovan , Ken Muir , Graham G Giles , Gianluca Severi , Fredrik Wiklund , Henrik Gronberg , Christopher A Haiman , Fredrick Schumacher , Brian E Henderson , Loic Le Marchand , Sara Lindstrom , Peter Kraft , David J Hunter , Susan Gapstur , Stephen J Chanock , Sonja I Berndt , Demetrius Albanes , Gerald Andriole , Johanna Schleutker , Maren Weischer , Federico Canzian , Elio Riboli , Tim J Key , Ruth C Travis , Daniele Campa , Sue A Ingles , Esther M John , Richard B Hayes , Paul D P Pharoah , Nora Pashayan , Kay-Tee Khaw , Janet L Stanford , Elaine A Ostrander , Lisa B Signorello , Stephen N Thibodeau , Dan Schaid , Christiane Maier , Walther Vogel , Adam S Kibel , Cezary Cybulski , Jan Lubinski , Lisa Cannon-Albright , Hermann Brenner , Jong Y Park , Radka Kaneva , Jyotsna Batra , Amanda B Spurdle , Judith A Clements , Manuel R Teixeira , Ed Dicks , Andrew Lee , Alison M Dunning , Caroline Baynes , Don Conroy , Melanie J Maranian , Shahana Ahmed , Koveela Govindasami , Michelle Guy , Rosemary A Wilkinson , Emma J Sawyer , Angela Morgan , David P Dearnaley , Alan Horwich , Robert A Huddart , Vincent S Khoo , Christopher C Parker , Nicholas J Van As , Christopher J Woodhouse , Alan Thompson , Tim Dudderidge , Chris Ogden , Colin S Cooper , Artitaya Lophatananon , Angela Cox , Melissa C Southey , John L Hopper , Dallas R English , Markus Aly , Jan Adolfsson , Jiangfeng Xu , Siqun L Zheng , Meredith Yeager , Rudolf Kaaks , W Ryan Diver , Mia M Gaudet , Mariana C Stern , Roman Corral , Amit D Joshi , Ahva Shahabi , Tiina Wahlfors , Teuvo L J Tammela , Anssi Auvinen , Jarmo Virtamo , Peter Klarskov , Børge G Nordestgaard , M Andreas Røder , Sune F Nielsen , Stig E Bojesen , Afshan Siddiq , Liesel M Fitzgerald , Suzanne Kolb , Erika M Kwon , Danielle M Karyadi , William J Blot , Wei Zheng , Qiuyin Cai , Shannon K McDonnell , Antje E Rinckleb , Bettina Drake , Graham Colditz , Dominika Wokolorczyk , Robert A Stephenson , Craig Teerlink , Heiko Muller , Dietrich Rothenbacher , Thomas A Sellers , Hui-Yi Lin , Chavdar Slavov , Vanio Mitev , Felicity Lose , Srilakshmi Srinivasan , Sofia Maia , Paula Paulo , Ethan Lange , Kathleen A Cooney , Antonis C Antoniou , Daniel Vincent , François Bacot , Daniel C Tessier , COGS–Cancer Research UK GWAS–ELLIPSE (part of GAME-ON) Initiative , Australian Prostate Cancer Bioresource , UK Genetic Prostate Cancer Study Collaborators/British Association of Urological Surgeons' Section of Oncology , UK ProtecT (Prostate testing for cancer and Treatment) Study Collaborators , PRACTICAL (Prostate Cancer Association Group to Investigate Cancer-Associated Alterations in the Genome) Consortium , Zsofia Kote-Jarai , Douglas F Easton

Genetic variants on 3q21 and in the Sp8 transcription factor gene (SP8) as susceptibility loci for psychotic disorders: a genetic association study.

PLoS ONE     Kenji Kondo , Masashi Ikeda , Yusuke Kajio , Takeo Saito , Yoshimi Iwayama , Branko Aleksic , Kazuo Yamada , Tomoko Toyota , Eiji Hattori , Hiroshi Ujike , Toshiya Inada , Hiroshi Kunugi , Tadafumi Kato , Takeo Yoshikawa , Norio Ozaki , Nakao Iwata

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.

Brief. Bioinformatics     Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas

Genome-wide association study of bipolar I disorder in the Han Chinese population.

Mol. Psychiatry     M T M Lee , C H Chen , C S Lee , C C Chen , M Y Chong , W C Ouyang , N Y Chiu , L J Chuo , C Y Chen , H K L Tan , H Y Lane , T J Chang , C H Lin , S H Jou , Y M Hou , J Feng , T J Lai , C L Tung , T J Chen , C J Chang , F W Lung , C K Chen , I S Shiah , C Y Liu , P R Teng , K H Chen , L J Shen , C S Cheng , T P Chang , C F Li , C H Chou , C Y Chen , K H T Wang , C S J Fann , J Y Wu , Y T Chen , A T A Cheng

Maternal genes and facial clefts in offspring: a comprehensive search for genetic associations in two population-based cleft studies from Scandinavia.

PLoS ONE     Astanand Jugessur , Min Shi , HÃ¥kon Kristian Gjessing , Rolv Terje Lie , Allen James Wilcox , Clarice Ring Weinberg , Kaare Christensen , Abee Lowman Boyles , Sandra Daack-Hirsch , Truc Trung Nguyen , Lene Christiansen , Andrew Carl Lidral , Jeffrey Clark Murray

Genome-wide association of lipid-lowering response to statins in combined study populations.

PLoS One     Mathew J Barber , Lara M Mangravite , Craig L Hyde , Daniel I Chasman , Joshua D Smith , Catherine A McCarty , Xiaohui Li , Russell A Wilke , Mark J Rieder , Paul T Williams , Paul M Ridker , Aurobindo Chatterjee , Jerome I Rotter , Deborah A Nickerson , Matthew Stephens , Ronald M Krauss

An atlas of combinatorial transcriptional regulation in mouse and man.

Cell     Timothy Ravasi , Harukazu Suzuki , Carlo Vittorio Cannistraci , Shintaro Katayama , Vladimir B Bajic , Kai Tan , Altuna Akalin , Sebastian Schmeier , Mutsumi Kanamori-Katayama , Nicolas Bertin , Piero Carninci , Carsten O Daub , Alistair R R Forrest , Julian Gough , Sean Grimmond , Jung-Hoon Han , Takehiro Hashimoto , Winston Hide , Oliver Hofmann , Atanas Kamburov , Mandeep Kaur , Hideya Kawaji , Atsutaka Kubosaki , Timo Lassmann , Erik van Nimwegen , Cameron Ross MacPherson , Chihiro Ogawa , Aleksandar Radovanovic , Ariel Schwartz , Rohan D Teasdale , Jesper Tegnér , Boris Lenhard , Sarah A Teichmann , Takahiro Arakawa , Noriko Ninomiya , Kayoko Murakami , Michihira Tagami , Shiro Fukuda , Kengo Imamura , Chikatoshi Kai , Ryoko Ishihara , Yayoi Kitazume , Jun Kawai , David A Hume , Trey Ideker , Yoshihide Hayashizaki

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.

Genome Res.     Kouichi Kimura , Ai Wakamatsu , Yutaka Suzuki , Toshio Ota , Tetsuo Nishikawa , Riu Yamashita , Jun-ichi Yamamoto , Mitsuo Sekine , Katsuki Tsuritani , Hiroyuki Wakaguri , Shizuko Ishii , Tomoyasu Sugiyama , Kaoru Saito , Yuko Isono , Ryotaro Irie , Norihiro Kushida , Takahiro Yoneyama , Rie Otsuka , Katsuhiro Kanda , Takahide Yokoi , Hiroshi Kondo , Masako Wagatsuma , Katsuji Murakawa , Shinichi Ishida , Tadashi Ishibashi , Asako Takahashi-Fujii , Tomoo Tanase , Keiichi Nagai , Hisashi Kikuchi , Kenta Nakai , Takao Isogai , Sumio Sugano