Diverse modes of clonal evolution in HBV-related hepatocellular carcinoma revealed by single-cell genome sequencing.

Cell Res.     Meng Duan , Junfeng Hao , Sijia Cui , Daniel L Worthley , Shu Zhang , Zhichao Wang , Jieyi Shi , Longzi Liu , Xiaoying Wang , Aiwu Ke , Ya Cao , Ruibin Xi , Xiaoming Zhang , Jian Zhou , Jia Fan , Chong Li , Qiang Gao

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.

Brief. Bioinformatics     Pascale Gaudet , Michael S Livstone , Suzanna E Lewis , Paul D Thomas

Interaction proteomics analysis of polycomb proteins defines distinct PRC1 complexes in mammalian cells.

Mol Cell Proteomics     Julien Vandamme , Pamela Völkel , Claire Rosnoblet , Perrine Le Faou , Pierre-Olivier Angrand

The DNA sequence, annotation and analysis of human chromosome 3.

Nature     Donna M Muzny , Steven E Scherer , Rajinder Kaul , Jing Wang , Jun Yu , Ralf Sudbrak , Christian J Buhay , Rui Chen , Andrew Cree , Yan Ding , Shannon Dugan-Rocha , Rachel Gill , Preethi Gunaratne , R Alan Harris , Alicia C Hawes , Judith Hernandez , Anne V Hodgson , Jennifer Hume , Andrew Jackson , Ziad Mohid Khan , Christie Kovar-Smith , Lora R Lewis , Ryan J Lozado , Michael L Metzker , Aleksandar Milosavljevic , George R Miner , Margaret B Morgan , Lynne V Nazareth , Graham Scott , Erica Sodergren , Xing-Zhi Song , David Steffen , Sharon Wei , David A Wheeler , Mathew W Wright , Kim C Worley , Ye Yuan , Zhengdong Zhang , Charles Q Adams , M Ali Ansari-Lari , Mulu Ayele , Mary J Brown , Guan Chen , Zhijian Chen , James Clendenning , Kerstin P Clerc-Blankenburg , Runsheng Chen , Zhu Chen , Clay Davis , Oliver Delgado , Huyen H Dinh , Wei Dong , Heather Draper , Stephen Ernst , Gang Fu , Manuel L Gonzalez-Garay , Dawn K Garcia , Will Gillett , Jun Gu , Bailin Hao , Eric Haugen , Paul Havlak , Xin He , Steffen Hennig , Songnian Hu , Wei Huang , Laronda R Jackson , Leni S Jacob , Susan H Kelly , Michael Kube , Ruth Levy , Zhangwan Li , Bin Liu , Jing Liu , Wen Liu , Jing Lu , Manjula Maheshwari , Bao-Viet Nguyen , Geoffrey O Okwuonu , Anthony Palmeiri , Shiran Pasternak , Lesette M Perez , Karen A Phelps , Farah J H Plopper , Boqin Qiang , Christopher Raymond , Ruben Rodriguez , Channakhone Saenphimmachak , Jireh Santibanez , Hua Shen , Yan Shen , Sandhya Subramanian , Paul E Tabor , Daniel Verduzco , Lenee Waldron , Jian Wang , Jun Wang , Qiaoyan Wang , Gabrielle A Williams , Gane K-S Wong , Zhijian Yao , JingKun Zhang , Xiuqing Zhang , Guoping Zhao , Jianling Zhou , Yang Zhou , David Nelson , Hans Lehrach , Richard Reinhardt , Susan L Naylor , Huanming Yang , Maynard Olson , George Weinstock , Richard A Gibbs

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.

Genome Res.     Kouichi Kimura , Ai Wakamatsu , Yutaka Suzuki , Toshio Ota , Tetsuo Nishikawa , Riu Yamashita , Jun-ichi Yamamoto , Mitsuo Sekine , Katsuki Tsuritani , Hiroyuki Wakaguri , Shizuko Ishii , Tomoyasu Sugiyama , Kaoru Saito , Yuko Isono , Ryotaro Irie , Norihiro Kushida , Takahiro Yoneyama , Rie Otsuka , Katsuhiro Kanda , Takahide Yokoi , Hiroshi Kondo , Masako Wagatsuma , Katsuji Murakawa , Shinichi Ishida , Tadashi Ishibashi , Asako Takahashi-Fujii , Tomoo Tanase , Keiichi Nagai , Hisashi Kikuchi , Kenta Nakai , Takao Isogai , Sumio Sugano

Complete sequencing and characterization of 21,243 full-length human cDNAs.

Nat. Genet.     Toshio Ota , Yutaka Suzuki , Tetsuo Nishikawa , Tetsuji Otsuki , Tomoyasu Sugiyama , Ryotaro Irie , Ai Wakamatsu , Koji Hayashi , Hiroyuki Sato , Keiichi Nagai , Kouichi Kimura , Hiroshi Makita , Mitsuo Sekine , Masaya Obayashi , Tatsunari Nishi , Toshikazu Shibahara , Toshihiro Tanaka , Shizuko Ishii , Jun-ichi Yamamoto , Kaoru Saito , Yuri Kawai , Yuko Isono , Yoshitaka Nakamura , Kenji Nagahari , Katsuhiko Murakami , Tomohiro Yasuda , Takao Iwayanagi , Masako Wagatsuma , Akiko Shiratori , Hiroaki Sudo , Takehiko Hosoiri , Yoshiko Kaku , Hiroyo Kodaira , Hiroshi Kondo , Masanori Sugawara , Makiko Takahashi , Katsuhiro Kanda , Takahide Yokoi , Takako Furuya , Emiko Kikkawa , Yuhi Omura , Kumi Abe , Kumiko Kamihara , Naoko Katsuta , Kazuomi Sato , Machiko Tanikawa , Makoto Yamazaki , Ken Ninomiya , Tadashi Ishibashi , Hiromichi Yamashita , Katsuji Murakawa , Kiyoshi Fujimori , Hiroyuki Tanai , Manabu Kimata , Motoji Watanabe , Susumu Hiraoka , Yoshiyuki Chiba , Shinichi Ishida , Yukio Ono , Sumiyo Takiguchi , Susumu Watanabe , Makoto Yosida , Tomoko Hotuta , Junko Kusano , Keiichi Kanehori , Asako Takahashi-Fujii , Hiroto Hara , Tomo-o Tanase , Yoshiko Nomura , Sakae Togiya , Fukuyo Komai , Reiko Hara , Kazuha Takeuchi , Miho Arita , Nobuyuki Imose , Kaoru Musashino , Hisatsugu Yuuki , Atsushi Oshima , Naokazu Sasaki , Satoshi Aotsuka , Yoko Yoshikawa , Hiroshi Matsunawa , Tatsuo Ichihara , Namiko Shiohata , Sanae Sano , Shogo Moriya , Hiroko Momiyama , Noriko Satoh , Sachiko Takami , Yuko Terashima , Osamu Suzuki , Satoshi Nakagawa , Akihiro Senoh , Hiroshi Mizoguchi , Yoshihiro Goto , Fumio Shimizu , Hirokazu Wakebe , Haretsugu Hishigaki , Takeshi Watanabe , Akio Sugiyama , Makoto Takemoto , Bunsei Kawakami , Masaaki Yamazaki , Koji Watanabe , Ayako Kumagai , Shoko Itakura , Yasuhito Fukuzumi , Yoshifumi Fujimori , Megumi Komiyama , Hiroyuki Tashiro , Akira Tanigami , Tsutomu Fujiwara , Toshihide Ono , Katsue Yamada , Yuka Fujii , Kouichi Ozaki , Maasa Hirao , Yoshihiro Ohmori , Ayako Kawabata , Takeshi Hikiji , Naoko Kobatake , Hiromi Inagaki , Yasuko Ikema , Sachiko Okamoto , Rie Okitani , Takuma Kawakami , Saori Noguchi , Tomoko Itoh , Keiko Shigeta , Tadashi Senba , Kyoka Matsumura , Yoshie Nakajima , Takae Mizuno , Misato Morinaga , Masahide Sasaki , Takushi Togashi , Masaaki Oyama , Hiroko Hata , Manabu Watanabe , Takami Komatsu , Junko Mizushima-Sugano , Tadashi Satoh , Yuko Shirai , Yukiko Takahashi , Kiyomi Nakagawa , Koji Okumura , Takahiro Nagase , Nobuo Nomura , Hisashi Kikuchi , Yasuhiko Masuho , Riu Yamashita , Kenta Nakai , Tetsushi Yada , Yusuke Nakamura , Osamu Ohara , Takao Isogai , Sumio Sugano

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc. Natl. Acad. Sci. U.S.A.     Robert L Strausberg , Elise A Feingold , Lynette H Grouse , Jeffery G Derge , Richard D Klausner , Francis S Collins , Lukas Wagner , Carolyn M Shenmen , Gregory D Schuler , Stephen F Altschul , Barry Zeeberg , Kenneth H Buetow , Carl F Schaefer , Narayan K Bhat , Ralph F Hopkins , Heather Jordan , Troy Moore , Steve I Max , Jun Wang , Florence Hsieh , Luda Diatchenko , Kate Marusina , Andrew A Farmer , Gerald M Rubin , Ling Hong , Mark Stapleton , M Bento Soares , Maria F Bonaldo , Tom L Casavant , Todd E Scheetz , Michael J Brownstein , Ted B Usdin , Shiraki Toshiyuki , Piero Carninci , Christa Prange , Sam S Raha , Naomi A Loquellano , Garrick J Peters , Rick D Abramson , Sara J Mullahy , Stephanie A Bosak , Paul J McEwan , Kevin J McKernan , Joel A Malek , Preethi H Gunaratne , Stephen Richards , Kim C Worley , Sarah Hale , Angela M Garcia , Laura J Gay , Stephen W Hulyk , Debbie K Villalon , Donna M Muzny , Erica J Sodergren , Xiuhua Lu , Richard A Gibbs , Jessica Fahey , Erin Helton , Mark Ketteman , Anuradha Madan , Stephanie Rodrigues , Amy Sanchez , Michelle Whiting , Anup Madan , Alice C Young , Yuriy Shevchenko , Gerard G Bouffard , Robert W Blakesley , Jeffrey W Touchman , Eric D Green , Mark C Dickson , Alex C Rodriguez , Jane Grimwood , Jeremy Schmutz , Richard M Myers , Yaron S N Butterfield , Martin I Krzywinski , Ursula Skalska , Duane E Smailus , Angelique Schnerch , Jacqueline E Schein , Steven J M Jones , Marco A Marra , Mammalian Gene Collection Program Team

Normalization and subtraction: two approaches to facilitate gene discovery.

Genome Res.     M F Bonaldo , G Lennon , M B Soares