例如:"lncRNA", "apoptosis", "WRKY"

Patterning and gastrulation defects caused by the t(w18) lethal are due to loss of Ppp2r1a.

Biol Open. 2017 Jun 15;6(6):752-764
Lisette Lange 1 , Matthias Marks 2 , Jinhua Liu 2 , Lars Wittler 2 , Hermann Bauer 2 , Sandra Piehl 2 , Gabriele Bläß 2 , Bernd Timmermann 3 , Bernhard G Herrmann 4
Lisette Lange 1 , Matthias Marks 2 , Jinhua Liu 2 , Lars Wittler 2 , Hermann Bauer 2 , Sandra Piehl 2 , Gabriele Bläß 2 , Bernd Timmermann 3 , Bernhard G Herrmann 4
+ et al

[No authors listed]

Author information
  • 1 Free University Berlin, Department of Biology, Chemistry and Pharmacy, Takustrasse 3, Berlin 14195, Germany.
  • 2 Max Planck Institute for Molecular Genetics, Department Developmental Genetics, Ihnestraße 63-73, Berlin 14195, Germany.
  • 3 Max Planck Institute for Molecular Genetics, Sequencing Core Facility, Ihnestraße 63-73, Berlin 14195, Germany.
  • 4 Charité-University Medicine Berlin, Institute for Medical Genetics, Campus Benjamin Franklin, Hindenburgdamm 30, Berlin 12203, Germany.

摘要


The mouse t haplotype, a variant 20 cM genomic region on Chromosome 17, harbors 16 embryonic control genes identified by recessive lethal mutations isolated from wild mouse populations. Due to technical constraints so far only one of these, the t(w5) lethal, has been cloned and molecularly characterized. Here we report the molecular isolation of the t(w18) lethal. Embryos carrying the t(w18) lethal die from major gastrulation defects commencing with primitive streak formation at E6.5. We have used transcriptome and marker gene analyses to describe the molecular etiology of the t(w18) phenotype. We show that both WNT and Nodal signal transduction are impaired in the mutant epiblast, causing embryonic patterning defects and failure of primitive streak and mesoderm formation. By using a candidate gene approach, gene knockout by homologous recombination and genetic rescue, we have identified the gene causing the t(w18) phenotype as Ppp2r1a, encoding the PP2A scaffolding subunit PR65alpha. Our work highlights the importance of phosphatase 2A in embryonic patterning, primitive streak formation, gastrulation, and mesoderm formation downstream of WNT and Nodal signaling.

KEYWORDS: Mesoderm, PP2A phosphatase, Primitive streak, Signal transduction, t haplotype, tw18

原始数据


 保存测序数据
Sample name
Organism Experiment title Sample type Library instrument Attributes
development stagegenotypesource namestraintissue
tw18 /tw18
Mus musculus GSM2387400: tw18 /tw18; Mus musculus; RNA-Seq RNA-Seq Illumina HiSeq 2000 E6.5 tw18/tw18 tw18 homozygote epiblast 129/SvEv epiblast
tw18/+
Mus musculus GSM2387399: tw18/+; Mus musculus; RNA-Seq RNA-Seq Illumina HiSeq 2000 E6.5 tw18/+ tw18 heterozygote epiblast 129/SvEv epiblast
WT
Mus musculus GSM2387398: WT; Mus musculus; RNA-Seq RNA-Seq Illumina HiSeq 2000 E6.5 wildtype wild type epiblast 129/SvEv epiblast