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A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation.

Mol Cell. 2010 Apr 23;38(2):165-78. Epub 2010 Mar 25
Daniela Kleine-Kohlbrecher 1 , Jesper Christensen , Julien Vandamme , Iratxe Abarrategui , Mads Bak , Niels Tommerup , Xiaobing Shi , Or Gozani , Juri Rappsilber , Anna Elisabetta Salcini , Kristian Helin
Daniela Kleine-Kohlbrecher 1 , Jesper Christensen , Julien Vandamme , Iratxe Abarrategui , Mads Bak , Niels Tommerup , Xiaobing Shi , Or Gozani , Juri Rappsilber , Anna Elisabetta Salcini , Kristian Helin
+ et al

[No authors listed]

Author information
  • 1 Biotech Research and Innovation Centre (BRIC), Centre for Epigenetics, University of Copenhagen, Copenhagen, Denmark.
全文

摘要


X-linked mental retardation (XLMR) is an inherited disorder that mostly affects males and is caused by mutations in genes located on the X chromosome. Here, we show that the XLMR protein PHF8 and a C. elegans homolog F29B9.2 catalyze demethylation of di- and monomethylated lysine 9 of histone H3 (H3K9me2/me1). The PHD domain of PHF8 binds to H3K4me3 and colocalizes with H3K4me3 at transcription initiation sites. Furthermore, PHF8 interacts with another XMLR protein, ZNF711, which binds to a subset of PHF8 target genes, including the XLMR gene JARID1C. Of interest, the C. elegans PHF8 homolog is highly expressed in neurons, and mutant animals show impaired locomotion. Taken together, our results functionally link the XLMR gene PHF8 to two other XLMR genes, ZNF711 and JARID1C, indicating that MR genes may be functionally linked in pathways, causing the complex phenotypes observed in patients developing MR.

原始数据


 保存测序数据
Sample name
Organism Experiment title Sample type Library instrument Attributes
antibodycell linesource namesubclone
ZNF711 in SH-SY5Y
Homo sapiens GSM518560: ZNF711 in SH-SY5Y ChIP-Seq Illumina Genome Analyzer II anti-ZNF711 neuroblastoma cell line SH-SY5Y neuroblastoma cell line neuroblast-like subclone of SK-N-SH
PHF8 in SH-SY5Y
Homo sapiens GSM518559: PHF8 in SH-SY5Y ChIP-Seq Illumina Genome Analyzer II anti-PHF8 neuroblastoma cell line SH-SY5Y neuroblastoma cell line neuroblast-like subclone of SK-N-SH
H3K4me3 in SH-SY5Y
Homo sapiens GSM518558: H3K4me3 in SH-SY5Y ChIP-Seq Illumina Genome Analyzer II anti-H3K4me3 neuroblastoma cell line SH-SY5Y neuroblastoma cell line neuroblast-like subclone of SK-N-SH